Co-expression analysis

Gene ID	1622794_at
Gene name	hypothetical protein LOC100254649
Homology with Arabidopsis	Similar to At2g37200: integral membrane protein, putative (HF=3e-6)
Module size	22 genes
NF	0.37
%ile	54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.5	0.96	1622794_at	CF211821	hypothetical protein LOC100254649	-	3e-6	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.97	1609387_at	CB978426	similar to FIP2 (FH protein interacting protein 2); voltage-gated potassium channel	-	4e-48	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1610321_s_at	CB980394	hypothetical protein LOC100251531	-	9e-55	At1g64230	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1622694_at	CB979125	hypothetical protein LOC100245090	-	2e-28	At3g12760	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1616039_at	CF215123	hypothetical protein LOC100248352	-	1e-20	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1620593_at	BQ797219	hypothetical protein LOC100252659	-	1e-97	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1613287_at	BQ795475	-	-	1e-2	At1g76450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1610875_at	BQ796874	similar to coatomer protein epsilon subunit family protein / COPE family protein	-	2e-68	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1619361_at	CB982760	hypothetical protein LOC100260481	-	4e-9	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1616580_at	CF206767.1	hypothetical protein LOC100260322	-	2e+0	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1608103_at	CD801640	hypothetical protein LOC100266523	-	3e-61	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1615824_at	BQ799612	hypothetical protein LOC100255893	-	1e+0	At5g62510	F-box family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1615639_a_at	BQ795365	hypothetical protein LOC100266227	-	2e-14	At2g44060	late embryogenesis abundant family protein / LEA family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1616180_s_at	BQ797993	hypothetical protein LOC100245422	-	3e-13	At4g36190	serine-type peptidase	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1617378_at	CB978610	hypothetical protein LOC100265457	-	7e-43	At5g13780	GCN5-related N-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1620352_at	CB345400	hypothetical protein LOC100245299	-	9e-18	At1g11930	alanine racemase family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1619647_at	CB975254	similar to T5E21.11	-	5e-4	At1g27160	valyl-tRNA synthetase / valine--tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1610574_at	CF510554	hypothetical protein LOC100264544	-	4e-38	At4g33090	APM1 (AMINOPEPTIDASE M1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1613194_at	CF213913	hypothetical protein LOC100258632	-	4e-23	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1616684_at	CD797892	hypothetical protein LOC100253066	-	1e-3	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1613658_at	CD801951	hypothetical protein LOC100244785	-	4e-4	At2g02970	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1618305_at	CF208004	hypothetical protein LOC100256855	-	3e-73	At2g26990	FUS12 (FUSCA 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.0	88.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
1.9	87.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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