CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622793_at

Gene name hypothetical protein LOC100247146 /// hypothetical protein LOC100250759
Homology with Arabidopsis Similar to At2g17200: ubiquitin family protein (HF=3e-5)

Module size 6 genes

NF 0.57

%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.98 1622793_at CB920514 hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 - 3e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.83 94.6 0.99 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.61 83.2 0.98 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding O.I. H.G. S.X.
0.55 77.3 0.98 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.46 66.5 0.98 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) O.I. H.G. S.X.
0.21 24.0 0.98 1607415_at CB913224 hypothetical protein LOC100252123 - 9e-1 At2g01260 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.98	1622793_at	CB920514	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759	-	3e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.
0.83	94.6	0.99	1614608_at	CF212155	similar to protein transport protein Sec24, putative	-	4e-10	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.
0.61	83.2	0.98	1613126_at	CF214395	hypothetical protein LOC100232876	-	5e-35	At5g41950	binding	O.I.	H.G.	S.X.
0.55	77.3	0.98	1609317_at	AF243474.1	ethylene receptor-like	-	5e-102	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.
0.46	66.5	0.98	1620526_at	BQ799509	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	O.I.	H.G.	S.X.
0.21	24.0	0.98	1607415_at	CB913224	hypothetical protein LOC100252123	-	9e-1	At2g01260	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 96.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.4 95.5 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.7	96.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.4	95.5	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7608.3.A1_x_at, orthologous to the query gene, 1622793_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 Ta.7608.3.A1_x_at At2g17200 - - 1e+0 At5g22791 - O.I. H.G. S.X.
0.45 65.2 Ta.10185.2.S1_a_at At2g17200 - - 4e-1 At1g21410 SKP2A O.I. H.G. S.X.
0.45 65.2 Ta.10164.2.S1_a_at At2g17200 - - 2e+1 At5g12190 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.44 64.5 Ta.5204.1.S1_at At2g17200 - - 7e-1 At3g08680 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.42 60.9 Ta.8953.1.S1_a_at At2g17200 - - 1e+0 At4g05230 ubiquitin family protein O.I. H.G. S.X.
0.40 58.4 TaAffx.56573.1.S1_x_at At2g17200 - - 9e+0 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.35 49.8 Ta.30053.1.S1_at At2g17200 - - 8e-14 At1g26150 PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10) O.I. H.G. S.X.
0.32 44.4 Ta.8953.1.S1_x_at At2g17200 - - 1e+0 At4g05230 ubiquitin family protein O.I. H.G. S.X.
0.30 40.9 Ta.27685.3.S1_at At2g17200 - - 1e-2 At1g12070 Rho GDP-dissociation inhibitor family protein O.I. H.G. S.X.
0.30 40.9 Ta.3418.1.S1_x_at At2g17200 glutathione transferase F5 - 6e-1 At5g54430 universal stress protein (USP) family protein O.I. H.G. S.X.
0.30 40.9 Ta.30759.2.A1_a_at At2g17200 - - 4e+0 At4g32360 NADP adrenodoxin-like ferredoxin reductase O.I. H.G. S.X.
0.29 39.2 Ta.8953.2.A1_x_at At2g17200 - - 2e+0 At2g42240 nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.29 39.2 Ta.28697.2.S1_a_at At2g17200 starch branching enzyme 2 - 5e-74 At5g03650 SBE2.2 (starch branching enzyme 2.2) O.I. H.G. S.X.
0.28 39.2 TaAffx.92907.1.A1_at At2g17200 - - 2e-2 At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative O.I. H.G. S.X.
0.28 39.2 Ta.7875.1.A1_at At2g17200 - - 3e-7 At5g05830 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.27 35.6 Ta.11118.1.S1_at At2g17200 - - 2e-7 At5g12970 C2 domain-containing protein O.I. H.G. S.X.
0.26 33.6 Ta.4062.1.S1_a_at At2g17200 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) O.I. H.G. S.X.
0.25 32.1 Ta.6102.1.A1_s_at At2g17200 - - 1e+0 At3g01480 CYP38 (cyclophilin 38) O.I. H.G. S.X.
0.21 25.5 Ta.9628.2.S1_at At2g17200 - - 7e-4 At4g34260 FUC95A O.I. H.G. S.X.
0.20 24.0 TaAffx.28624.1.S1_at At2g17200 - - 1e+0 At2g22670 IAA8 O.I. H.G. S.X.
0.18 21.0 Ta.8296.1.S1_at At2g17200 expansin EXPA7 - 2e-1 At1g62333 unknown protein O.I. H.G. S.X.
0.16 18.2 Ta.6561.2.S1_at At2g17200 - - 6e-1 At3g63250 HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) O.I. H.G. S.X.
0.16 18.2 Ta.20658.1.S1_x_at At2g17200 - - 4e-1 At3g06130 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.15 17.1 Ta.10108.3.S1_a_at At2g17200 - - 2e-8 At2g35155 catalytic O.I. H.G. S.X.
0.14 15.8 Ta.21795.1.S1_at At2g17200 - - 7e-1 At2g35520 DAD2 (DEFENDER AGAINST CELL DEATH 2) O.I. H.G. S.X.
0.13 14.6 Ta.4811.1.S1_x_at At2g17200 - - 1e-2 At1g28590 lipase, putative O.I. H.G. S.X.
0.10 11.3 Ta.21020.1.S1_at At2g17200 - - 3e+0 At3g57710 protein kinase family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.2	Ta.7608.3.A1_x_at	At2g17200	-	-	1e+0	At5g22791	-	O.I.	H.G.	S.X.
0.45	65.2	Ta.10185.2.S1_a_at	At2g17200	-	-	4e-1	At1g21410	SKP2A	O.I.	H.G.	S.X.
0.45	65.2	Ta.10164.2.S1_a_at	At2g17200	-	-	2e+1	At5g12190	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.44	64.5	Ta.5204.1.S1_at	At2g17200	-	-	7e-1	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.42	60.9	Ta.8953.1.S1_a_at	At2g17200	-	-	1e+0	At4g05230	ubiquitin family protein	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.56573.1.S1_x_at	At2g17200	-	-	9e+0	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.
0.35	49.8	Ta.30053.1.S1_at	At2g17200	-	-	8e-14	At1g26150	PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10)	O.I.	H.G.	S.X.
0.32	44.4	Ta.8953.1.S1_x_at	At2g17200	-	-	1e+0	At4g05230	ubiquitin family protein	O.I.	H.G.	S.X.
0.30	40.9	Ta.27685.3.S1_at	At2g17200	-	-	1e-2	At1g12070	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.
0.30	40.9	Ta.3418.1.S1_x_at	At2g17200	glutathione transferase F5	-	6e-1	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.30	40.9	Ta.30759.2.A1_a_at	At2g17200	-	-	4e+0	At4g32360	NADP adrenodoxin-like ferredoxin reductase	O.I.	H.G.	S.X.
0.29	39.2	Ta.8953.2.A1_x_at	At2g17200	-	-	2e+0	At2g42240	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.29	39.2	Ta.28697.2.S1_a_at	At2g17200	starch branching enzyme 2	-	5e-74	At5g03650	SBE2.2 (starch branching enzyme 2.2)	O.I.	H.G.	S.X.
0.28	39.2	TaAffx.92907.1.A1_at	At2g17200	-	-	2e-2	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.
0.28	39.2	Ta.7875.1.A1_at	At2g17200	-	-	3e-7	At5g05830	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	35.6	Ta.11118.1.S1_at	At2g17200	-	-	2e-7	At5g12970	C2 domain-containing protein	O.I.	H.G.	S.X.
0.26	33.6	Ta.4062.1.S1_a_at	At2g17200	-	-	2e-1	At4g38420	sks9 (SKU5 Similar 9)	O.I.	H.G.	S.X.
0.25	32.1	Ta.6102.1.A1_s_at	At2g17200	-	-	1e+0	At3g01480	CYP38 (cyclophilin 38)	O.I.	H.G.	S.X.
0.21	25.5	Ta.9628.2.S1_at	At2g17200	-	-	7e-4	At4g34260	FUC95A	O.I.	H.G.	S.X.
0.20	24.0	TaAffx.28624.1.S1_at	At2g17200	-	-	1e+0	At2g22670	IAA8	O.I.	H.G.	S.X.
0.18	21.0	Ta.8296.1.S1_at	At2g17200	expansin EXPA7	-	2e-1	At1g62333	unknown protein	O.I.	H.G.	S.X.
0.16	18.2	Ta.6561.2.S1_at	At2g17200	-	-	6e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.16	18.2	Ta.20658.1.S1_x_at	At2g17200	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.15	17.1	Ta.10108.3.S1_a_at	At2g17200	-	-	2e-8	At2g35155	catalytic	O.I.	H.G.	S.X.
0.14	15.8	Ta.21795.1.S1_at	At2g17200	-	-	7e-1	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	O.I.	H.G.	S.X.
0.13	14.6	Ta.4811.1.S1_x_at	At2g17200	-	-	1e-2	At1g28590	lipase, putative	O.I.	H.G.	S.X.
0.10	11.3	Ta.21020.1.S1_at	At2g17200	-	-	3e+0	At3g57710	protein kinase family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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Gene ID	1622793_at
Gene name	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759
Homology with Arabidopsis	Similar to At2g17200: ubiquitin family protein (HF=3e-5)
Module size	6 genes
NF	0.57
%ile	84.2

Co-expression analysis

Gene ID 1622793_at Gene name hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 Homology with ArabidopsisSimilar to At2g17200: ubiquitin family protein (HF=3e-5) Module size 6 genes NF 0.57 %ile 84.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaZea_mays

Gene ID 1622793_at

Gene name hypothetical protein LOC100247146 /// hypothetical protein LOC100250759
Homology with Arabidopsis Similar to At2g17200: ubiquitin family protein (HF=3e-5)

Module size 6 genes

NF 0.57

%ile 84.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays