CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622793_at

Gene name hypothetical protein LOC100247146 /// hypothetical protein LOC100250759
Homology with Arabidopsis Similar to At2g17200: ubiquitin family protein (HF=3e-5)

Module size 6 genes

NF 0.57

%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.98 1622793_at CB920514 hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 - 3e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.83 94.6 0.99 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.61 83.2 0.98 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding O.I. H.G. S.X.
0.55 77.3 0.98 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.46 66.5 0.98 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) O.I. H.G. S.X.
0.21 24.0 0.98 1607415_at CB913224 hypothetical protein LOC100252123 - 9e-1 At2g01260 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 96.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.4 95.5 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.160603.1.A1_at, orthologous to the query gene, 1622793_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 PtpAffx.160603.1.A1_at At2g17200 hypothetical protein - 1e+0 At5g44390 FAD-binding domain-containing protein O.I. H.G. S.X.
0.18 30.8 PtpAffx.51027.1.S1_at At2g17200 - - 2e+0 At5g64120 peroxidase, putative O.I. H.G. S.X.
0.02 3.6 PtpAffx.17610.1.A1_at At2g17200 hypothetical protein - 3e-5 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.02 3.6 PtpAffx.79437.1.S1_s_at At2g17200 hypothetical protein - 5e-43 At2g30980 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) O.I. H.G. S.X.
0.01 2.2 PtpAffx.13676.1.A1_at At2g17200 hypothetical protein - 3e-4 At2g26260 AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2) O.I. H.G. S.X.
0.01 2.2 PtpAffx.33603.1.A1_a_at At2g17200 hypothetical protein - 1e-18 At2g17200 ubiquitin family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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