CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622793_at

Gene name hypothetical protein LOC100247146 /// hypothetical protein LOC100250759
Homology with Arabidopsis Similar to At2g17200: ubiquitin family protein (HF=3e-5)

Module size 6 genes

NF 0.57

%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.98 1622793_at CB920514 hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 - 3e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.83 94.6 0.99 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.61 83.2 0.98 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding O.I. H.G. S.X.
0.55 77.3 0.98 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.46 66.5 0.98 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) O.I. H.G. S.X.
0.21 24.0 0.98 1607415_at CB913224 hypothetical protein LOC100252123 - 9e-1 At2g01260 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 96.2 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.4 95.5 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, Os03g0131300, orthologous to the query gene, 1622793_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os03g0131300 At2g17200 - Ubiquitin domain containing protein 5e-12 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.43 55.4 Os06g0583400 At2g17200 - Histone deacetylase HDAC1 6e-61 At4g38130 HD1 (HISTONE DEACETYLASE 1) O.I. H.G. S.X.
0.31 34.5 Os03g0261500 At2g17200 - Heat shock protein DnaJ family protein 3e-9 At5g22080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.17 12.6 Os01g0258700 At2g17200 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 5e-6 At2g47850 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.12 7.2 Os05g0295800 At2g17200 - Glyoxalase I (EC 4.4.1.5) 2e-10 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.11 6.5 Os04g0531700 At2g17200 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.09 4.9 Os03g0747200 At2g17200 - Conserved hypothetical protein 6e-2 At1g20050 HYD1 (HYDRA1) O.I. H.G. S.X.
0.08 4.2 Os09g0482400 At2g17200 - Heat shock protein 82 4e+0 At5g45360 F-box family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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