Co-expression analysis

Gene ID	1622793_at
Gene name	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759
Homology with Arabidopsis	Similar to At2g17200: ubiquitin family protein (HF=3e-5)
Module size	6 genes
NF	0.57
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.98	1622793_at	CB920514	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759	-	3e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1614608_at	CF212155	similar to protein transport protein Sec24, putative	-	4e-10	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1613126_at	CF214395	hypothetical protein LOC100232876	-	5e-35	At5g41950	binding	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1609317_at	AF243474.1	ethylene receptor-like	-	5e-102	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1620526_at	BQ799509	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1607415_at	CB913224	hypothetical protein LOC100252123	-	9e-1	At2g01260	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.4	95.5	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, Contig8629_at, orthologous to the query gene, 1622793_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig8629_at	At2g17200	-	-	3e-6	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig8299_at	At2g17200	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig15070_at	At2g17200	-	-	1e-2	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig23066_at	At2g17200	-	-	1e+0	At5g54890	RNA binding	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig5226_at	At2g17200	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig10840_at	At2g17200	-	-	4e-6	At5g50780	ATP binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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