Co-expression analysis

Gene ID	1622775_at
Gene name	hypothetical protein LOC100241371
Homology with Arabidopsis	Similar to At4g00570: malate oxidoreductase, putative (HF=3e-7)
Module size	8 genes
NF	0.26
%ile	36.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.97	1622775_at	CF415430	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1615129_at	CF518930	hypothetical protein LOC100256954	-	3e-11	At5g58240	bis(5'-adenosyl)-triphosphatase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1616020_a_at	CA817685	hypothetical protein LOC100242210 /// hypothetical protein LOC100265608	-	1e+0	At3g62420	ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1609604_at	CF513913	hypothetical protein LOC100264326	-	2e-3	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1618498_at	CB008237	hypothetical protein LOC100255416	-	7e-6	At5g01980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1614592_at	CB009333	similar to FAR1 (FAR-RED IMPAIRED RESPONSE 1)	-	4e-1	At5g53670	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1617006_at	CF514282	hypothetical protein LOC100255735	-	6e-10	At4g33350	chloroplast inner membrane import protein Tic22, putative	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.98	1612995_at	CD012259	-	-	4e-18	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
2.2	89.9	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
1.9	87.2	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
1.9	87.2	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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