Co-expression analysis

Gene ID	1622773_at
Gene name	hypothetical protein LOC100253381
Homology with Arabidopsis	Similar to At4g15975: protein binding / zinc ion binding (HF=2e-2)
Module size	9 genes
NF	0.71
%ile	94.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.93	1622773_at	CF605812	hypothetical protein LOC100253381	-	2e-2	At4g15975	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.95	1609190_at	BQ798327	hypothetical protein LOC100253381	-	6e+0	At3g23180	-	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.95	1612490_at	CB035871	-	-	4e+0	At2g39920	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1622598_at	CF372747	hypothetical protein LOC100253485	-	3e-27	At5g22250	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.95	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1608256_at	CF404926	hypothetical protein LOC100265659	-	3e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.95	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.96	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.95	1606975_at	CD799008	hypothetical protein LOC100248784	-	4e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.7	93.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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