Co-expression analysis

Gene ID	1622769_at
Gene name	hypothetical protein LOC100243302
Homology with Arabidopsis	Similar to At1g55520: TBP2 (TATA BINDING PROTEIN 2) (HF=1e-22)
Module size	6 genes
NF	0.59
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1622769_at	BQ793816	hypothetical protein LOC100243302	-	1e-22	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1611985_at	CF404643	hypothetical protein LOC100267021	-	2e-26	At5g15880	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1622061_at	CD798716	hypothetical protein LOC100264484	-	3e-10	At1g59820	ALA3 (Aminophospholipid ATPase3)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.99	1619247_at	CB971481	hypothetical protein LOC100256712	-	7e-11	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1616079_at	CD801867	hypothetical LOC100255014	-	3e-21	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1616860_at	BQ792203	hypothetical protein LOC100261021	-	4e-83	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.6	92.5	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.6	92.5	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.4	91.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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