CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622756_at

Gene name similar to 60S ribosomal protein L34
Homology with Arabidopsis Similar to At1g69620: RPL34 (RIBOSOMAL PROTEIN L34) (HF=5e-31)

Module size 8 genes

NF 0.58

%ile 85.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.9 0.98 1622756_at CF414976 similar to 60S ribosomal protein L34 - 5e-31 At1g69620 RPL34 (RIBOSOMAL PROTEIN L34) O.I. H.G. S.X.
0.67 87.9 0.99 1610497_s_at BQ794436 hypothetical protein LOC100243420 - 1e-50 At3g04920 40S ribosomal protein S24 (RPS24A) O.I. H.G. S.X.
0.61 83.2 0.99 1606742_at CF405288 similar to 40S ribosomal S4 protein - 2e-86 At5g58420 40S ribosomal protein S4 (RPS4D) O.I. H.G. S.X.
0.61 83.2 0.99 1618864_at BQ800592 similar to ribosomal protein L10a - 5e-56 At1g08360 60S ribosomal protein L10A (RPL10aA) O.I. H.G. S.X.
0.55 77.3 0.99 1609627_s_at CB978960 hypothetical protein LOC100256302 - 9e-3 At5g09510 40S ribosomal protein S15 (RPS15D) O.I. H.G. S.X.
0.55 77.3 0.99 1607259_s_at CF511061 hypothetical protein LOC100242794 - 7e-65 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.50 72.7 0.99 1608425_at CB910322 hypothetical protein LOC100267018 - 1e-1 At5g67510 60S ribosomal protein L26 (RPL26B) O.I. H.G. S.X.
0.39 54.9 0.99 1615194_at CF373310 hypothetical protein LOC100256025 - 3e-29 At1g77940 60S ribosomal protein L30 (RPL30B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 96.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436386 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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