Co-expression analysis

Gene ID	1622717_s_at
Gene name
Homology with Arabidopsis	Similar to At5g65590: Dof-type zinc finger domain-containing protein (HF=2e-1)
Module size	18 genes
NF	0.17
%ile	25.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.92	1622717_s_at	CF606082	-	-	2e-1	At5g65590	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1608129_at	CF372430	hypothetical protein LOC100265789	-	1e-87	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.94	1610127_at	CB920325	-	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1614482_at	CF206009.1	hypothetical protein LOC100241833	-	2e-21	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1609966_a_at	BQ798735	hypothetical protein LOC100249980 /// hypothetical protein LOC100245503	-	3e-1	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.96	1612131_at	CD797537	hypothetical protein LOC100263680	-	5e+0	Atcg01120	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.94	1609051_at	CA818195	-	-	4e-32	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1616741_at	CB978754	hypothetical protein LOC100246939	-	5e-3	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1610828_at	CB974880	hypothetical protein LOC100252326	-	3e-5	At5g46750	AGD9 (ARF-GAP DOMAIN 9)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.94	1622279_at	CF200642.1	-	-	3e+0	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.95	1619674_at	CD715040	-	-	3e-1	At5g40500	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1609961_at	CB982487	-	-	4e+0	At4g33610	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1611593_at	BQ799465	-	-	5e+0	At5g63440	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1610376_at	CB922451	hypothetical protein LOC100241274	-	8e-6	At5g65540	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.97	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.96	1617157_at	CF212494	hypothetical protein LOC100243483	-	1e-7	At3g49350	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1613521_at	CF514518	metallothionein	-	5e-19	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.96	1613915_s_at	CA810703	hypothetical protein LOC100263937	-	7e-90	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.6	92.5	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.2	89.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
1.9	87.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.9	87.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.8	86.0	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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