CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622567_at

Gene name hypothetical protein LOC100266603
Homology with Arabidopsis Similar to At5g27490: integral membrane Yip1 family protein (HF=2e-20)

Module size 6 genes

NF 0.55

%ile 81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 79.8 0.98 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.60 81.9 0.98 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.53 75.2 0.98 1606778_at CF607072 hypothetical protein LOC100261953 - 6e-30 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.46 66.5 0.98 1622000_s_at CF604800 hypothetical protein LOC100242169 - 1e+0 At3g27329 - O.I. H.G. S.X.
0.46 66.5 0.98 1611102_at CF603491 hypothetical protein LOC100259129 - 4e-22 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) O.I. H.G. S.X.
0.40 57.7 0.98 1621762_at CF371697 hypothetical protein LOC100242812 - 6e-30 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.57	79.8	0.98	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.60	81.9	0.98	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.53	75.2	0.98	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.46	66.5	0.98	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.
0.46	66.5	0.98	1611102_at	CF603491	hypothetical protein LOC100259129	-	4e-22	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	O.I.	H.G.	S.X.
0.40	57.7	0.98	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	83.2	0.97	1617009_at	CF202370.1	hypothetical protein LOC100245566	-	9e-1	At4g30410	transcription factor	O.I.	H.G.	S.X.
0.53	75.2	0.96	1611688_at	CB973896	hypothetical protein LOC100257505	-	1e+0	At4g07868	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.97	1617090_at	CA808721	hypothetical protein LOC100246523	-	6e-2	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.
0.50	72.7	0.97	1619239_at	CF605787	hypothetical protein LOC100267514	-	2e-1	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.47	67.7	0.97	1610578_at	BG273711	hypothetical protein LOC100247027	-	1e-13	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	O.I.	H.G.	S.X.
0.46	66.5	0.97	1608950_at	CF606755	hypothetical protein LOC100251050	-	1e-6	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.44	64.1	0.97	1618236_at	CF210257	hypothetical protein LOC100260911	-	4e-3	At1g50350	-	O.I.	H.G.	S.X.
0.43	61.5	0.97	1617653_at	CA818371	hypothetical protein LOC100260671	-	5e-2	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.
0.40	57.7	0.97	1620788_at	CF603169	similar to ferrodoxin NADP oxidoreductase	-	2e-17	At4g05390	ATRFNR1 (ROOT FNR 1)	O.I.	H.G.	S.X.
0.40	57.7	0.97	1613128_at	CF212268	hypothetical protein LOC100265002	-	2e-49	At1g76670	transporter-related	O.I.	H.G.	S.X.
0.40	57.7	0.98	1608708_at	CF211873	hypothetical protein LOC100255983	-	2e-9	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	O.I.	H.G.	S.X.
0.38	53.6	0.96	1620615_at	CF213325	hypothetical protein LOC100256688	-	1e-16	At4g18950	ankyrin protein kinase, putative	O.I.	H.G.	S.X.
0.38	53.6	0.97	1615136_at	CF206458.1	hypothetical protein LOC100255051	-	1e-68	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.
0.32	43.1	0.95	1617592_at	CB971943	hypothetical protein LOC100259923	-	6e-3	At1g62990	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	O.I.	H.G.	S.X.
0.32	43.1	0.97	1610254_at	CF517943	hypothetical protein LOC100266073	-	2e-5	At4g16530	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.97	1620731_at	CB340492	hypothetical protein LOC100255501	-	1e+0	At1g49840	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.97	1613081_at	CB977107	hypothetical protein LOC100266621	-	3e-22	At5g18640	lipase class 3 family protein	O.I.	H.G.	S.X.
0.29	37.7	0.96	1620179_at	CB912064	hypothetical protein LOC100241542 /// hypothetical protein LOC100261171	-	1e-53	At4g13020	MHK	O.I.	H.G.	S.X.
0.29	37.7	0.97	1611857_at	CA810729	hypothetical protein LOC100261569	-	3e-21	At3g50690	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1618937_at	CB920899	hypothetical protein LOC100255532	-	2e-14	At4g29960	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1613321_at	CF516415	hypothetical protein LOC100244395	-	5e-49	At5g55070	2-oxoacid dehydrogenase family protein	O.I.	H.G.	S.X.
0.27	34.0	0.96	1618434_at	CF213012	hypothetical protein LOC100261603	-	6e-33	At5g41970	-	O.I.	H.G.	S.X.
0.27	34.0	0.96	1607858_at	CD719873	hypothetical protein LOC100249628	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.
0.25	30.5	0.97	1612833_at	CF211047	hypothetical protein LOC100247455	-	9e-17	At5g10460	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.8 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.4 97.3 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.3 90.7 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.8	97.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1622567_at
Gene name	hypothetical protein LOC100266603
Homology with Arabidopsis	Similar to At5g27490: integral membrane Yip1 family protein (HF=2e-20)
Module size	6 genes
NF	0.55
%ile	81.6

Co-expression analysis

Gene ID 1622567_at Gene name hypothetical protein LOC100266603 Homology with ArabidopsisSimilar to At5g27490: integral membrane Yip1 family protein (HF=2e-20) Module size 6 genes NF 0.55 %ile 81.6

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1622567_at

Gene name hypothetical protein LOC100266603
Homology with Arabidopsis Similar to At5g27490: integral membrane Yip1 family protein (HF=2e-20)

Module size 6 genes

NF 0.55

%ile 81.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays