Co-expression analysis

Gene ID	1622567_at
Gene name	hypothetical protein LOC100266603
Homology with Arabidopsis	Similar to At5g27490: integral membrane Yip1 family protein (HF=2e-20)
Module size	6 genes
NF	0.55
%ile	81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.98	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1611102_at	CF603491	hypothetical protein LOC100259129	-	4e-22	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5789.1.S1_at, orthologous to the query gene, 1622567_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	79.4	Ptp.5789.1.S1_at	At5g27490	hypothetical protein	-	2e-11	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.13016.1.S1_s_at	At5g27490	hypothetical protein	-	2e-46	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	Ptp.746.1.A1_at	At5g27490	hypothetical protein	-	3e-2	At2g16595	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.74	93.8	PtpAffx.14196.1.S1_s_at	At5g27490	hypothetical protein	-	4e-4	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.4942.2.S1_s_at	At5g27490	hypothetical protein	-	1e-11	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.11912.1.S1_at	At5g27490	hypothetical protein	-	2e-34	At3g07680	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.450.1.S1_at	At5g27490	hypothetical protein	-	2e-72	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.663.1.S1_x_at	At5g27490	hypothetical protein	-	1e-90	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.936.1.S1_s_at	At5g27490	hypothetical protein	-	2e-50	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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