Co-expression analysis

Gene ID	1622567_at
Gene name	hypothetical protein LOC100266603
Homology with Arabidopsis	Similar to At5g27490: integral membrane Yip1 family protein (HF=2e-20)
Module size	6 genes
NF	0.55
%ile	81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.98	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1611102_at	CF603491	hypothetical protein LOC100259129	-	4e-22	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the barley gene, HVSMEb0014L17f_at, orthologous to the query gene, 1622567_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.2	HVSMEb0014L17f_at	At5g27490	-	-	2e+0	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.	Please select
0.74	89.1	Contig686_at	At5g27490	glutamate 1-semialdehyde aminotransferase	-	7e-20	At3g48730	GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig11817_at	At5g27490	-	-	3e-2	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig6870_at	At5g27490	-	-	6e-57	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig6253_at	At5g27490	-	-	3e-19	At5g26030	FC1 (ferrochelatase 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig105_at	At5g27490	-	-	7e-36	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig863_s_at	At5g27490	-	-	3e-6	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig19130_at	At5g27490	-	-	6e+0	At5g62210	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig15737_at	At5g27490	-	-	1e-1	At3g30370	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig18644_at	At5g27490	-	-	1e+0	At4g13210	lyase/ pectate lyase	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig12779_at	At5g27490	-	-	2e-2	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig14913_at	At5g27490	-	-	1e+0	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig8078_at	At5g27490	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig8498_at	At5g27490	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig8406_at	At5g27490	-	-	4e-2	At3g10040	transcription factor	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig12682_at	At5g27490	-	-	1e+1	At5g44572	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig8360_at	At5g27490	-	-	2e-23	At4g00370	ANTR2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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