CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622567_at

Gene name hypothetical protein LOC100266603
Homology with Arabidopsis Similar to At5g27490: integral membrane Yip1 family protein (HF=2e-20)

Module size 6 genes

NF 0.55

%ile 81.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 79.8 0.98 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.60 81.9 0.98 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.53 75.2 0.98 1606778_at CF607072 hypothetical protein LOC100261953 - 6e-30 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.46 66.5 0.98 1622000_s_at CF604800 hypothetical protein LOC100242169 - 1e+0 At3g27329 - O.I. H.G. S.X.
0.46 66.5 0.98 1611102_at CF603491 hypothetical protein LOC100259129 - 4e-22 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) O.I. H.G. S.X.
0.40 57.7 0.98 1621762_at CF371697 hypothetical protein LOC100242812 - 6e-30 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.8 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.4 97.3 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.3 90.7 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the soybean gene, Gma.739.1.S1_at, orthologous to the query gene, 1622567_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 Gma.739.1.S1_at At5g27490 - - 6e-15 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.46 65.5 GmaAffx.67599.1.S1_at At5g27490 - - 7e-14 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.40 57.1 GmaAffx.86610.1.S1_s_at At5g27490 - - 3e-6 At3g42050 vacuolar ATP synthase subunit H family protein O.I. H.G. S.X.
0.31 42.2 GmaAffx.22627.1.S1_x_at At5g27490 - - 4e-2 At1g18520 TET11 (TETRASPANIN11) O.I. H.G. S.X.
0.26 33.9 GmaAffx.93138.1.S1_s_at At5g27490 - - 2e-27 At2g32080 PUR ALPHA-1 O.I. H.G. S.X.
0.22 28.1 Gma.13169.1.S1_at At5g27490 - - 1e-48 At3g01150 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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