CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622559_at

Gene name hypothetical LOC100244512
Homology with Arabidopsis Similar to At1g42990: ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) (HF=9e-22)

Module size 6 genes

NF 0.24

%ile 33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.98 1622559_at CF606481 hypothetical LOC100244512 - 9e-22 At1g42990 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) O.I. H.G. S.X.
0.33 45.7 0.98 1620076_s_at CA809762 hypothetical protein LOC100254960 - 6e-15 At1g15270 - O.I. H.G. S.X.
0.21 24.0 0.98 1615700_at CA809560 similar to VPS24.1 - 2e-8 At5g22950 VPS24.1 O.I. H.G. S.X.
0.19 20.9 0.98 1610645_at CD004549 hypothetical protein LOC100251896 - 2e-13 At1g61620 phosphoinositide binding O.I. H.G. S.X.
0.16 16.7 0.98 1612888_at CF406033 - - 4e+0 At4g16080 unknown protein O.I. H.G. S.X.
0.13 13.3 0.98 1617557_at CB981480 hypothetical protein LOC100255856 - 3e-7 At1g75110 RRA2 (REDUCED RESIDUAL ARABINOSE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.6 92.5 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.6 92.5 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.4 91.3 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12649.1.S1_at, orthologous to the query gene, 1622559_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 Ta.12649.1.S1_at At1g42990 - - 2e+1 Atmg00980 - O.I. H.G. S.X.
0.91 98.2 Ta.25258.1.S1_at At1g42990 - - 4e-21 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) O.I. H.G. S.X.
0.77 90.8 Ta.6175.2.A1_x_at At1g42990 - - 1e+0 At3g49550 unknown protein O.I. H.G. S.X.
0.71 88.0 Ta.24114.15.A1_x_at At1g42990 Alpha/beta-gliadin precursor - 6e-1 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) O.I. H.G. S.X.
0.59 79.8 Ta.119.1.S1_x_at At1g42990 serpin - 3e+0 At2g26390 serpin, putative / serine protease inhibitor, putative O.I. H.G. S.X.
0.57 79.2 TaAffx.120246.1.S1_x_at At1g42990 - - 1e+0 At1g53030 cytochrome c oxidase copper chaperone family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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