Co-expression analysis

Gene ID	1622559_at
Gene name	hypothetical LOC100244512
Homology with Arabidopsis	Similar to At1g42990: ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) (HF=9e-22)
Module size	6 genes
NF	0.24
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.98	1622559_at	CF606481	hypothetical LOC100244512	-	9e-22	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1620076_s_at	CA809762	hypothetical protein LOC100254960	-	6e-15	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1615700_at	CA809560	similar to VPS24.1	-	2e-8	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1610645_at	CD004549	hypothetical protein LOC100251896	-	2e-13	At1g61620	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1612888_at	CF406033	-	-	4e+0	At4g16080	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.98	1617557_at	CB981480	hypothetical protein LOC100255856	-	3e-7	At1g75110	RRA2 (REDUCED RESIDUAL ARABINOSE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.6	92.5	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig9431_at, orthologous to the query gene, 1622559_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	62.2	Contig9431_at	At1g42990	-	-	1e-1	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig8078_at	At1g42990	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig15951_at	At1g42990	-	-	1e-1	At2g02930	ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3)	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig16107_at	At1g42990	-	-	2e+0	At3g09980	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig9234_at	At1g42990	-	-	2e-1	At1g37000	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig997_x_at	At1g42990	-	-	2e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig863_s_at	At1g42990	-	-	3e-6	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig1337_s_at	At1g42990	-	-	1e+0	At2g37060	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig21290_at	At1g42990	-	-	2e+0	At5g01910	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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