CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622481_x_at

Gene name
Homology with Arabidopsis Similar to At5g10430: AGP4 (ARABINOGALACTAN PROTEIN 4) (HF=3e-2)

Module size 6 genes

NF 0.69

%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1622481_x_at CF568921 - - 3e-2 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) O.I. H.G. S.X.
0.67 87.9 0.97 1615124_at CF514122 hypothetical protein LOC100258563 - 8e-5 At1g71691 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.67 87.9 0.98 1619772_at CF205273.1 hypothetical protein LOC100260458 - 2e+0 At3g05070 - O.I. H.G. S.X.
0.63 84.3 0.96 1615118_at CF373171 hypothetical protein LOC100241584 - 1e+0 At4g36620 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.61 83.2 0.96 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) O.I. H.G. S.X.
0.40 57.7 0.98 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 97.2 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.23753.3.S1_x_at, orthologous to the query gene, 1622481_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 Ta.23753.3.S1_x_at At5g10430 - - 4e+0 At3g28560 - O.I. H.G. S.X.
0.38 54.7 Ta.6163.2.S1_a_at At5g10430 - - 4e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.
0.35 49.8 TaAffx.82847.1.S1_at At5g10430 - - 8e-21 At1g65650 UCH2 O.I. H.G. S.X.
0.25 32.1 Ta.28154.2.S1_s_at At5g10430 - - 4e-3 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.25 32.1 Ta.6288.2.S1_x_at At5g10430 - - 3e+0 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.14 15.8 TaAffx.129143.2.S1_at At5g10430 - - 7e-8 At4g10790 UBX domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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