Co-expression analysis

Gene ID 1622481_x_at
Gene name
Homology with ArabidopsisSimilar to At5g10430: AGP4 (ARABINOGALACTAN PROTEIN 4) (HF=3e-2)
Module size 6 genes
NF 0.69
%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971622481_x_atCF568921--3e-2At5g10430AGP4 (ARABINOGALACTAN PROTEIN 4)O.I.H.G.S.X.
0.6787.90.971615124_atCF514122hypothetical protein LOC100258563-8e-5At1g71691GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.6787.90.981619772_atCF205273.1hypothetical protein LOC100260458-2e+0At3g05070-O.I.H.G.S.X.
0.6384.30.961615118_atCF373171hypothetical protein LOC100241584-1e+0At4g36620zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.6183.20.961620954_atCF513203hypothetical protein LOC100242907-7e-2At4g04900RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)O.I.H.G.S.X.
0.4057.70.981611748_s_atCB969590similar to PDF-1e-1At2g42840PDF1 (PROTODERMAL FACTOR 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.2GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.696.0GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.4820.6.A1_at, orthologous to the query gene, 1622481_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.2PtpAffx.4820.6.A1_atAt5g10430hypothetical protein-8e+0At3g21970receptor-like protein kinase-relatedO.I.H.G.S.X.
0.4471.9PtpAffx.224903.1.S1_x_atAt5g10430BED finger-nbs-lrr resistance protein-1e+0At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.2238.3PtpAffx.208613.1.S1_atAt5g10430--4e-5At3g50940AAA-type ATPase family proteinO.I.H.G.S.X.
0.2238.3PtpAffx.93272.1.A1_atAt5g10430hypothetical protein-9e-1At1g80200unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.153815.1.A1_atAt5g10430--2e-1At1g77765unknown proteinO.I.H.G.S.X.
0.1321.6Ptp.2650.1.S1_atAt5g10430--2e-1At1g56045ribosomal protein L41 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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