Co-expression analysis

Gene ID	1622481_x_at
Gene name
Homology with Arabidopsis	Similar to At5g10430: AGP4 (ARABINOGALACTAN PROTEIN 4) (HF=3e-2)
Module size	6 genes
NF	0.69
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1615124_at	CF514122	hypothetical protein LOC100258563	-	8e-5	At1g71691	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1619772_at	CF205273.1	hypothetical protein LOC100260458	-	2e+0	At3g05070	-	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.96	1615118_at	CF373171	hypothetical protein LOC100241584	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.96	1620954_at	CF513203	hypothetical protein LOC100242907	-	7e-2	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.2	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig6470_at, orthologous to the query gene, 1622481_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	Contig6470_at	At5g10430	-	-	1e-3	At5g55290	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig7028_at	At5g10430	-	-	7e-1	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig6456_s_at	At5g10430	-	-	4e+0	At3g16120	dynein light chain, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig6182_at	At5g10430	-	-	5e-5	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig5487_s_at	At5g10430	-	-	3e-1	At5g65207	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig6801_at	At5g10430	-	-	9e-2	At1g65270	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig13457_s_at	At5g10430	-	-	6e-9	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	HVSMEm0018N06r2_at	At5g10430	-	-	4e+0	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig20000_s_at	At5g10430	-	-	1e+1	At5g21430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig11763_at	At5g10430	-	-	7e-2	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig15092_at	At5g10430	-	-	1e-6	At2g40980	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig11368_at	At5g10430	-	-	1e-28	At1g16740	ribosomal protein L20 family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8580_s_at	At5g10430	-	-	5e-2	At5g20670	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig10853_at	At5g10430	-	-	6e-1	At3g29036	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	HT05G10u_s_at	At5g10430	-	-	9e-1	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig13620_at	At5g10430	-	-	8e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please select
0.25	28.9	HVSMEa0005G02f2_s_at	At5g10430	-	-	2e-2	At4g31740	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig4469_at	At5g10430	-	-	4e-63	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig4583_s_at	At5g10430	-	-	8e-27	At4g29160	SNF7.1	O.I.	H.G.	S.X.	Please select
0.17	16.9	EBro03_SQ005_C24_s_at	At5g10430	-	-	4e+0	At5g40180	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig1122_s_at	At5g10430	-	-	1e-22	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig2110_at	At5g10430	-	-	1e-2	At2g39900	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig9797_at	At5g10430	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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