CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622481_x_at

Gene name
Homology with Arabidopsis Similar to At5g10430: AGP4 (ARABINOGALACTAN PROTEIN 4) (HF=3e-2)

Module size 6 genes

NF 0.69

%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1622481_x_at CF568921 - - 3e-2 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) O.I. H.G. S.X.
0.67 87.9 0.97 1615124_at CF514122 hypothetical protein LOC100258563 - 8e-5 At1g71691 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.67 87.9 0.98 1619772_at CF205273.1 hypothetical protein LOC100260458 - 2e+0 At3g05070 - O.I. H.G. S.X.
0.63 84.3 0.96 1615118_at CF373171 hypothetical protein LOC100241584 - 1e+0 At4g36620 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.61 83.2 0.96 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) O.I. H.G. S.X.
0.40 57.7 0.98 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 97.2 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g10430, orthologous to the query gene, 1622481_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.48 62.5 At5g10430 830907 AGP4 (ARABINOGALACTAN PROTEIN 4) Encodes arabinogalactan-protein (AGP4). O.I. H.G. S.X.
0.75 86.9 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). O.I. H.G. S.X.
0.55 70.6 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 At5g37790 833757 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.40 50.8 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. H.G. S.X.
0.40 50.8 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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