Co-expression analysis

Gene ID	1622454_at
Gene name	hypothetical protein LOC100246221
Homology with Arabidopsis	Similar to At1g26630: FBR12 (FUMONISIN B1-RESISTANT12) (HF=2e-1)
Module size	25 genes
NF	0.18
%ile	27.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.86	1622454_at	CF413990	hypothetical protein LOC100246221	-	2e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.92	1612359_at	CF204147.1	hypothetical protein LOC100261266	-	3e+0	At1g02475	-	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.93	1612980_at	CD718165	-	-	4e+0	At4g12090	cornichon family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1617013_at	CF519184	-	-	8e-1	At3g29000	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.91	1617302_s_at	CF204570.1	-	-	5e+0	At4g21620	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.91	1608158_at	CF373350	hypothetical protein LOC100264927	-	1e-22	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.90	1607501_at	CB975794	hypothetical protein LOC100254535	-	1e+0	At2g11270	citrate synthase-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1618331_at	CF208850	hypothetical protein LOC100249945	-	6e-2	At2g32487	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1620006_at	CB982905	hypothetical protein LOC100251737	-	4e+0	At5g21020	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1609997_at	CB001509	hypothetical protein LOC100242049	-	1e+0	At1g56240	AtPP2-B13 (Phloem protein 2-B13)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1619026_s_at	CB349994	hypothetical protein LOC100265941	-	3e-10	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.92	1617834_at	CF403807	-	-	1e+0	At2g18200	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1615443_at	CF211454	hypothetical protein LOC100266172	-	6e-2	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.92	1619653_at	CF517251	hypothetical LOC100246762	-	1e+0	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1613021_at	CF215847	hypothetical protein LOC100256504	-	1e-8	At4g10750	HpcH/HpaI aldolase family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.95	1606466_at	CF512311	hypothetical protein LOC100250341	-	1e-80	At1g79830	GC5 (golgin candidate 5)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1617145_at	CD801008	-	-	2e+0	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.92	1616966_at	CD012505	hypothetical LOC100249999	-	1e-41	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.94	1607955_at	CB978189	hypothetical protein LOC100262411	-	4e-22	At4g01900	GLB1 (GLNB1 HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.96	1614075_at	BQ796544	hypothetical protein LOC100249048	-	2e+0	At1g07410	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.93	1609557_at	CF511274	hypothetical protein LOC100249298	-	8e-23	At3g01800	ribosome recycling factor family protein / ribosome releasing factor family protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.94	1618669_at	CD797734	hypothetical protein LOC100258243	-	2e-69	At1g59760	ATP-dependent RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.94	1607001_at	CF404264	hypothetical protein LOC100259087	-	0	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1615164_at	CB005422	hypothetical protein LOC100248214	-	1e-9	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.90	1618671_at	CB347847	-	-	4e+0	At5g42930	triacylglycerol lipase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.7	84.7	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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