Co-expression analysis

Gene ID	1622451_s_at
Gene name	S-adenosyl-L-methionine decarboxylase
Homology with Arabidopsis	Similar to At5g15950: adenosylmethionine decarboxylase family protein (HF=8e-4)
Module size	14 genes
NF	0.23
%ile	32.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	0.94	1622451_s_at	CB982889	S-adenosyl-L-methionine decarboxylase	-	8e-4	At5g15950	adenosylmethionine decarboxylase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1617949_at	CF213069	hypothetical protein LOC100241470	-	1e-3	At3g09735	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.96	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1620826_s_at	CB341136	hypothetical protein LOC100254009	-	3e-26	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1617060_s_at	CB977776	glutathione reductase (NADPH)	-	3e-84	At3g54660	GR (GLUTATHIONE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1615820_at	BQ796436	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1620519_at	CF214639	similar to transcription factor /// hypothetical protein LOC100244736 /// hypothetical protein LOC100247112 /// hypothetical protein LOC100250564 /// hypothetical protein LOC100263253 /// hypothetical protein LOC100264237	-	8e-26	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1608138_s_at	CB342671	-	-	0	Atcg00120	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1614796_at	CF609955	hypothetical protein LOC100250729	-	4e-19	At1g42960	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1609958_at	BQ800106	similar to PPX2 (protein phosphatase x-2); protein serine/threonine phosphatase	-	1e+0	At1g04040	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1617886_at	CB982919	hypothetical protein LOC100254626	-	1e-20	At4g36480	ATLCB1 (LONG-CHAIN BASE1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1613581_at	CB981734	hypothetical protein LOC100262899	-	1e-17	At3g17800	-	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1614135_at	CF211085	similar to PPX2 (protein phosphatase x-2); protein serine/threonine phosphatase	-	2e-179	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.94	1620021_at	CB969237	hypothetical protein LOC100246037	-	4e-37	At1g48030	mtLPD1 (mitochondrial lipoamide dehydrogenase 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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