Co-expression analysis

Gene ID	1622422_at
Gene name	hypothetical protein LOC100251499
Homology with Arabidopsis	Similar to At1g72990: BGAL17 (beta-galactosidase 17) (HF=2e-21)
Module size	6 genes
NF	0.14
%ile	22.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.96	1622422_at	CD800947	hypothetical protein LOC100251499	-	2e-21	At1g72990	BGAL17 (beta-galactosidase 17)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1607618_at	CB920876	hypothetical protein LOC100263508	-	3e-2	At3g14160	oxidoreductase	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1610493_at	BQ799159	hypothetical protein LOC100242667	-	5e-47	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1612176_at	CF212948	hypothetical protein LOC100250907	-	5e-23	At3g17940	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1608968_at	CB342367	hypothetical protein LOC100251348	-	7e-22	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.96	1606434_at	CB918530	similar to glucose-6-phosphate isomerase	-	7e-40	At5g42740	glucose-6-phosphate isomerase, cytosolic (PGIC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	99.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.5	99.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5	98.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.0	96.7	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, OsAffx.21945.3.S1_at, orthologous to the query gene, 1622422_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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