Co-expression analysis

Gene ID	1622415_at
Gene name
Homology with Arabidopsis	Similar to At4g04953: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.03
%ile	6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1622415_at	CF519029	-	-	4e+0	At4g04953	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1613948_at	CF405473	hypothetical protein LOC100261411	-	6e-14	At3g53800	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.94	1619931_s_at	CB349799	hypothetical LOC100246843	-	7e-130	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.96	1613823_at	CB005662	hypothetical protein LOC100249524	-	1e-1	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1610260_at	CF215252	hypothetical protein LOC100248375	-	1e-14	At1g07080	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1617868_at	CF516567	hypothetical protein LOC100252587	-	1e+0	At3g03870	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	99.5	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.8	99.5	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.8	99.0	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.8	98.6	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.2	97.1	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.1	94.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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