Co-expression analysis

Gene ID	1622405_at
Gene name
Homology with Arabidopsis	Similar to At1g67540: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.03
%ile	7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.76	1622405_at	CD010667	-	-	3e-1	At1g67540	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.94	1608448_at	BQ792197	hypothetical protein LOC100267648	-	1e-45	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.97	1619182_at	CF208986	hypothetical protein LOC100250963	-	2e-1	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.96	1615162_at	BQ794390	hypothetical protein LOC100249784	-	3e-4	At5g16210	HEAT repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.96	1611827_at	CD797779	hypothetical protein LOC100250193	-	6e-1	At4g12860	UNE14 (unfertilized embryo sac 14)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.96	1607687_s_at	BQ792489	hypothetical protein LOC100241478	-	3e-42	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.1	89.1	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.0	88.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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