Co-expression analysis

Gene ID 1622393_at
Gene name proline rich protein 1
Homology with ArabidopsisSimilar to At5g67460: glycosyl hydrolase family protein 17 (HF=1e+0)
Module size 6 genes
NF 0.81
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971622393_atCF373123proline rich protein 1-1e+0At5g67460glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.8394.60.971618487_atCF403542--1e+0At3g01980short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.7792.30.971616000_atCF215116hypothetical protein LOC100257299-2e-1At4g35025unknown proteinO.I.H.G.S.X.
0.6787.90.971607467_atCD800366hypothetical protein LOC100257154-4e+0At3g03800SYP131 (SYNTAXIN OF PLANTS 131)O.I.H.G.S.X.
0.6787.90.981611598_atCB970208hypothetical protein LOC100244034-7e+0At5g38630ACYB-1O.I.H.G.S.X.
0.6183.20.971611976_atCF213700hypothetical protein LOC100260879-4e-1At2g20362unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.390.7GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.390.7GSM147673Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation2Link to GEO
2.390.7GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.189.1GSM147686Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation15Link to GEO
2.088.2GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
2.088.2GSM147726Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation55Link to GEO
2.088.2GSM147692Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation21Link to GEO
1.987.2GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
1.987.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig23169_at, orthologous to the query gene, 1622393_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.7Contig23169_atAt5g67460--7e-1At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.8092.5HVSMEn0020J09f_atAt5g67460--8e-1At3g13800metallo-beta-lactamase family proteinO.I.H.G.S.X.
0.7388.7Contig4025_s_atAt5g67460--1e-4At1g62180APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)O.I.H.G.S.X.
0.6784.7Contig10656_atAt5g67460--2e-1At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.5066.9HVSMEn0020J05f_x_atAt5g67460--2e-1At3g12345unknown proteinO.I.H.G.S.X.
0.4356.4EBpi01_SQ003_E16_s_atAt5g67460--3e+0At5g28295unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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