Co-expression analysis

Gene ID	1622386_at
Gene name	hypothetical protein LOC100264172
Homology with Arabidopsis	Similar to At5g44210: ERF9 (ERF DOMAIN PROTEIN 9) (HF=9e-3)
Module size	31 genes
NF	0.29
%ile	41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	0.96	1622386_at	BQ794629	hypothetical protein LOC100264172	-	9e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1607118_at	CB982987	-	-	2e+0	At3g61090	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1612713_at	BQ797805	similar to histone H3	-	3e-57	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1621177_at	CF215740	hypothetical protein LOC100258972	-	4e+0	At1g48325	Expressed protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1611948_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1615283_at	CD799238	hypothetical protein LOC100258625	-	2e-3	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	AFFX-BioDn-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	AFFX-Vvi-X03453-2_s_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1606994_at	CD004387	hypothetical protein LOC100246089	-	6e-10	At5g16510	reversibly glycosylated polypeptide, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	AFFX-r2-P1-cre-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1612771_at	CF210342	-	-	5e-16	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1619498_a_at	CF511021	hypothetical protein LOC100262348	-	3e-8	At4g38710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	AFFX-r2-P1-cre-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	AFFX-CreX-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1614665_s_at	BQ799768	similar to Tubby; Cyclin-like F-box	-	5e-16	At1g53320	AtTLP7 (TUBBY LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1607202_s_at	CD797631	hypothetical protein LOC100242295	-	2e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1615163_at	CF414631	hypothetical protein LOC100248092	-	5e+0	At5g49440	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1609086_s_at	CA808952	similar to F2D10.18	-	6e-16	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1612566_at	CF208882	-	-	4e-128	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1615632_a_at	CB977610	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1622085_at	CB978859	hypothetical protein LOC100262035	-	4e-4	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1611180_at	BQ795485	hypothetical protein LOC100263350	-	5e+0	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1618769_at	CF214762	similar to AT4g27960	-	1e-72	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1619228_at	BQ794778	hypothetical protein LOC100248533	-	8e-5	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1619039_at	CF405804	hypothetical protein LOC100261285	-	2e-3	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1609850_at	CB979570	hypothetical protein LOC100244857	-	3e-7	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1621875_s_at	CB009610	hypothetical protein LOC100262179	-	3e-42	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1620419_at	BQ794848	hypothetical protein LOC100241492	-	5e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.98	1613809_at	CF372821	hypothetical protein LOC100247494	-	3e-50	At1g69340	appr-1-p processing enzyme family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
1.6	83.3	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.6	83.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.5	81.7	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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