Co-expression analysis

Gene ID	1622304_at
Gene name	hypothetical protein LOC100267709
Homology with Arabidopsis	Similar to At2g19740: 60S ribosomal protein L31 (RPL31A) (HF=2e+0)
Module size	6 genes
NF	0.61
%ile	88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1622304_at	CF513613	hypothetical protein LOC100267709	-	2e+0	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1615118_at	CF373171	hypothetical protein LOC100241584	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1611804_at	CF513259	hypothetical protein LOC100252436	-	1e-1	At2g16890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1615124_at	CF514122	hypothetical protein LOC100258563	-	8e-5	At1g71691	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	97.5	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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