Co-expression analysis

Gene ID	1622282_at
Gene name	hypothetical protein LOC100245852
Homology with Arabidopsis	Similar to At1g06020: pfkB-type carbohydrate kinase family protein (HF=2e-10)
Module size	6 genes
NF	0.48
%ile	71.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.93	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.95	1608328_s_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.94	1618478_at	CF515277	hypothetical protein LOC100259390	-	4e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1610233_at	CF201218.1	hypothetical protein LOC100260900	-	1e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.6	99.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.5	98.4	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.6	92.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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