Co-expression analysis

Gene ID 1622246_at
Gene name
Homology with ArabidopsisSimilar to At4g34800: auxin-responsive family protein (HF=2e-1)
Module size 11 genes
NF 0.04
%ile 9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.861622246_atCF212159--2e-1At4g34800auxin-responsive family proteinO.I.H.G.S.X.
0.3853.60.931615522_atCF212682--7e+0At5g16870aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.3853.60.931620867_atCK138217.1hypothetical protein LOC100246928-8e-2At1g28680transferase family proteinO.I.H.G.S.X.
0.3548.50.951614836_s_atBQ794862S-adenosylmethionine synthetase 5-0At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.2937.70.951612984_atCD800853hypothetical protein LOC100256822-5e-3At2g36290hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.1718.20.951614825_atCF214450hypothetical protein LOC100257887-4e-27At1g243603-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseO.I.H.G.S.X.
0.056.00.951613410_s_atCB922329similar to plastid acyl carrier protein-4e-4At1g54580ACP2 (ACYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.056.00.931619205_atCD799106hypothetical protein LOC100247421-1e+1At5g25570unknown proteinO.I.H.G.S.X.
0.023.20.921606515_atCF202859.1--4e-1At1g15340MBD10O.I.H.G.S.X.
0.023.20.931610506_atCB913489--3e-7At5g18270ANAC087O.I.H.G.S.X.
0.012.10.901616047_s_atCF569212.1hypothetical protein LOC100266255-9e+0At5g05113unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.4GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.189.1GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.088.2GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.886.0GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.886.0GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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