CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622162_at

Gene name
Homology with Arabidopsis Similar to At3g02390: unknown protein (HF=1e+0)

Module size 48 genes

NF 0.29

%ile 42.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 0.89 1622162_at CD718954 - - 1e+0 At3g02390 unknown protein O.I. H.G. S.X.
0.45 64.6 0.93 1620549_s_at CF206023.1 - - 4e+0 At4g14358 - O.I. H.G. S.X.
0.43 61.5 0.95 1606772_at CF606865 hypothetical protein LOC100259703 /// hypothetical LOC100258253 - 1e-35 At4g16390 - O.I. H.G. S.X.
0.42 60.1 0.93 1606935_at CB969531 hypothetical protein LOC100262240 - 6e-51 At1g79440 ALDH5F1 O.I. H.G. S.X.
0.41 58.7 0.94 1614524_at CB981815 hypothetical protein LOC100261162 - 7e-9 At5g51545 LPA2 (low psii accumulation2) O.I. H.G. S.X.
0.40 57.7 0.96 1610684_at CF210128 hypothetical protein LOC100249184 - 2e-128 At4g24280 cpHsc70-1 (chloroplast heat shock protein 70-1) O.I. H.G. S.X.
0.40 57.7 0.93 1608548_s_at CF207041.1 hypothetical protein LOC100243384 - 3e+0 At5g43211 unknown protein O.I. H.G. S.X.
0.39 54.9 0.93 1622413_at CD714494 - - 3e-1 At4g39070 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.39 54.9 0.91 1613388_at CF568873 - - 1e-9 At4g25370 Clp amino terminal domain-containing protein O.I. H.G. S.X.
0.36 50.7 0.92 1606449_at CF210281 hypothetical protein LOC100268079 - 6e-2 At4g29170 ATMND1 O.I. H.G. S.X.
0.36 50.7 0.95 1620605_at CF210822 hypothetical protein LOC100266146 - 2e-1 At1g49310 unknown protein O.I. H.G. S.X.
0.34 46.8 0.95 1615523_at CF517695 hypothetical protein LOC100249796 - 2e-21 At1g33270 patatin-related O.I. H.G. S.X.
0.33 45.7 0.91 1620736_a_at CD714912 hypothetical protein LOC100255654 - 3e-39 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.
0.33 45.7 0.96 1622806_at CB009073 hypothetical protein LOC100258640 - 6e-87 At1g66430 pfkB-type carbohydrate kinase family protein O.I. H.G. S.X.
0.32 43.1 0.95 1614903_at CF213705 hypothetical protein LOC100258657 - 6e-3 At5g47630 mtACP3 (mitochondrial acyl carrier protein 3) O.I. H.G. S.X.
0.31 41.3 0.96 1611203_at CF513211 hypothetical protein LOC100258402 - 4e-11 At5g16710 DHAR3 (dehydroascorbate reductase 1) O.I. H.G. S.X.
0.31 41.3 0.94 1619091_at CF517410 hypothetical protein LOC100262799 - 7e-19 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) O.I. H.G. S.X.
0.29 37.7 0.94 1617670_at CF211965 hypothetical protein LOC100260576 - 8e-90 At2g21170 TIM (TRIOSEPHOSPHATE ISOMERASE) O.I. H.G. S.X.
0.29 37.7 0.93 1620738_at CD711276 hypothetical protein LOC100247142 - 1e-4 At4g08280 - O.I. H.G. S.X.
0.29 37.7 0.96 1614152_at CF213905 hypothetical protein LOC100253976 - 6e-78 At5g09650 AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) O.I. H.G. S.X.
0.29 37.7 0.96 1614814_s_at CB345895 hypothetical protein LOC100267103 - 5e-13 At2g47400 CP12-1 O.I. H.G. S.X.
0.29 37.7 0.96 1621895_at CA816130 hypothetical protein LOC100248517 - 7e-37 At2g18710 SCY1 (SecY Homolog 1) O.I. H.G. S.X.
0.29 37.7 0.96 1617630_at CF514753 hypothetical protein LOC100251032 - 3e-10 At3g52750 FTSZ2-2 O.I. H.G. S.X.
0.28 37.7 0.96 1614439_at CF213916 - - 3e-55 At1g48520 GATB (GLU-ADT SUBUNIT B) O.I. H.G. S.X.
0.28 37.7 0.94 1613448_at BQ799182 hypothetical protein LOC100259397 - 3e-13 At4g13250 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.28 37.7 0.92 1607456_at CD718630 hypothetical protein LOC100259397 - 3e-14 At4g13250 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.27 34.0 0.97 1622747_at CF210672 hypothetical protein LOC100254207 - 3e-18 At5g52440 HCF106 O.I. H.G. S.X.
0.27 34.0 0.95 1607951_at CA817288 hypothetical protein LOC100264984 - 4e-13 At5g42070 unknown protein O.I. H.G. S.X.
0.26 32.0 0.94 1615927_s_at CB972155 hypothetical protein LOC100249080 - 3e-2 At1g60950 FED A O.I. H.G. S.X.
0.25 30.5 0.96 1612114_at BQ797697 hypothetical protein LOC100264713 - 1e+0 At5g60000 unknown protein O.I. H.G. S.X.
0.25 30.5 0.95 1620434_at BQ794889 hypothetical protein LOC100240915 - 4e+0 At2g15500 - O.I. H.G. S.X.
0.25 30.5 0.94 1618918_at CA817284 - - 3e-10 At1g78915 binding O.I. H.G. S.X.
0.25 30.5 0.97 1608391_at CA817568 hypothetical protein LOC100255376 - 5e-12 At1g60230 radical SAM domain-containing protein O.I. H.G. S.X.
0.25 30.5 0.92 1614270_at CD010750 - - 3e-20 At3g07670 SET domain-containing protein O.I. H.G. S.X.
0.24 28.7 0.92 1607083_at CB002933 - - 4e+0 At3g17950 unknown protein O.I. H.G. S.X.
0.24 28.7 0.97 1621285_at CB347466 hypothetical protein LOC100251632 - 3e-24 At4g01310 ribosomal protein L5 family protein O.I. H.G. S.X.
0.24 28.7 0.94 1616065_at CA816079 hypothetical protein LOC100245646 - 1e-14 At3g59980 tRNA-binding region domain-containing protein O.I. H.G. S.X.
0.24 28.7 0.97 1617425_at BQ799379 hypothetical protein LOC100242172 - 2e-12 At5g21920 YGGT family protein O.I. H.G. S.X.
0.24 28.7 0.96 1615706_at CA816068 hypothetical protein LOC100257450 - 1e-4 At1g44920 unknown protein O.I. H.G. S.X.
0.23 27.5 0.92 1613936_x_at CF568996 - - 8e-24 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.23 27.5 0.96 1609993_at CF415478 hypothetical protein LOC100267329 - 1e-3 At3g55040 GSTL2 O.I. H.G. S.X.
0.22 25.6 0.91 1617410_at BQ800114 hypothetical protein LOC100263359 - 2e-3 At2g35810 unknown protein O.I. H.G. S.X.
0.22 25.6 0.96 1616385_at CB342680 hypothetical protein LOC100250293 - 4e+0 At4g23080 unknown protein O.I. H.G. S.X.
0.22 25.6 0.95 1607111_at BQ796309 hypothetical protein LOC100249657 - 2e+0 At5g57345 unknown protein O.I. H.G. S.X.
0.21 24.0 0.95 1609611_at CF608067 hypothetical protein LOC100254000 - 9e-39 At5g45390 CLPP4 (CLP PROTEASE P4) O.I. H.G. S.X.
0.20 22.4 0.97 1610525_at CA814677 hypothetical protein LOC100260680 - 2e-15 At1g50900 - O.I. H.G. S.X.
0.17 18.2 0.96 1621821_s_at CD802160 hypothetical protein LOC100267911 - 3e-1 At4g29480 mitochondrial ATP synthase g subunit family protein O.I. H.G. S.X.
0.17 18.2 0.95 1607273_at CA817598 hypothetical protein LOC100261673 - 4e-3 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	0.89	1622162_at	CD718954	-	-	1e+0	At3g02390	unknown protein	O.I.	H.G.	S.X.
0.45	64.6	0.93	1620549_s_at	CF206023.1	-	-	4e+0	At4g14358	-	O.I.	H.G.	S.X.
0.43	61.5	0.95	1606772_at	CF606865	hypothetical protein LOC100259703 /// hypothetical LOC100258253	-	1e-35	At4g16390	-	O.I.	H.G.	S.X.
0.42	60.1	0.93	1606935_at	CB969531	hypothetical protein LOC100262240	-	6e-51	At1g79440	ALDH5F1	O.I.	H.G.	S.X.
0.41	58.7	0.94	1614524_at	CB981815	hypothetical protein LOC100261162	-	7e-9	At5g51545	LPA2 (low psii accumulation2)	O.I.	H.G.	S.X.
0.40	57.7	0.96	1610684_at	CF210128	hypothetical protein LOC100249184	-	2e-128	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	O.I.	H.G.	S.X.
0.40	57.7	0.93	1608548_s_at	CF207041.1	hypothetical protein LOC100243384	-	3e+0	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.39	54.9	0.93	1622413_at	CD714494	-	-	3e-1	At4g39070	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.
0.39	54.9	0.91	1613388_at	CF568873	-	-	1e-9	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.
0.36	50.7	0.92	1606449_at	CF210281	hypothetical protein LOC100268079	-	6e-2	At4g29170	ATMND1	O.I.	H.G.	S.X.
0.36	50.7	0.95	1620605_at	CF210822	hypothetical protein LOC100266146	-	2e-1	At1g49310	unknown protein	O.I.	H.G.	S.X.
0.34	46.8	0.95	1615523_at	CF517695	hypothetical protein LOC100249796	-	2e-21	At1g33270	patatin-related	O.I.	H.G.	S.X.
0.33	45.7	0.91	1620736_a_at	CD714912	hypothetical protein LOC100255654	-	3e-39	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.
0.33	45.7	0.96	1622806_at	CB009073	hypothetical protein LOC100258640	-	6e-87	At1g66430	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.32	43.1	0.95	1614903_at	CF213705	hypothetical protein LOC100258657	-	6e-3	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	O.I.	H.G.	S.X.
0.31	41.3	0.96	1611203_at	CF513211	hypothetical protein LOC100258402	-	4e-11	At5g16710	DHAR3 (dehydroascorbate reductase 1)	O.I.	H.G.	S.X.
0.31	41.3	0.94	1619091_at	CF517410	hypothetical protein LOC100262799	-	7e-19	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.
0.29	37.7	0.94	1617670_at	CF211965	hypothetical protein LOC100260576	-	8e-90	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.
0.29	37.7	0.93	1620738_at	CD711276	hypothetical protein LOC100247142	-	1e-4	At4g08280	-	O.I.	H.G.	S.X.
0.29	37.7	0.96	1614152_at	CF213905	hypothetical protein LOC100253976	-	6e-78	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	O.I.	H.G.	S.X.
0.29	37.7	0.96	1614814_s_at	CB345895	hypothetical protein LOC100267103	-	5e-13	At2g47400	CP12-1	O.I.	H.G.	S.X.
0.29	37.7	0.96	1621895_at	CA816130	hypothetical protein LOC100248517	-	7e-37	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.
0.29	37.7	0.96	1617630_at	CF514753	hypothetical protein LOC100251032	-	3e-10	At3g52750	FTSZ2-2	O.I.	H.G.	S.X.
0.28	37.7	0.96	1614439_at	CF213916	-	-	3e-55	At1g48520	GATB (GLU-ADT SUBUNIT B)	O.I.	H.G.	S.X.
0.28	37.7	0.94	1613448_at	BQ799182	hypothetical protein LOC100259397	-	3e-13	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.28	37.7	0.92	1607456_at	CD718630	hypothetical protein LOC100259397	-	3e-14	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1622747_at	CF210672	hypothetical protein LOC100254207	-	3e-18	At5g52440	HCF106	O.I.	H.G.	S.X.
0.27	34.0	0.95	1607951_at	CA817288	hypothetical protein LOC100264984	-	4e-13	At5g42070	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.94	1615927_s_at	CB972155	hypothetical protein LOC100249080	-	3e-2	At1g60950	FED A	O.I.	H.G.	S.X.
0.25	30.5	0.96	1612114_at	BQ797697	hypothetical protein LOC100264713	-	1e+0	At5g60000	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.95	1620434_at	BQ794889	hypothetical protein LOC100240915	-	4e+0	At2g15500	-	O.I.	H.G.	S.X.
0.25	30.5	0.94	1618918_at	CA817284	-	-	3e-10	At1g78915	binding	O.I.	H.G.	S.X.
0.25	30.5	0.97	1608391_at	CA817568	hypothetical protein LOC100255376	-	5e-12	At1g60230	radical SAM domain-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.92	1614270_at	CD010750	-	-	3e-20	At3g07670	SET domain-containing protein	O.I.	H.G.	S.X.
0.24	28.7	0.92	1607083_at	CB002933	-	-	4e+0	At3g17950	unknown protein	O.I.	H.G.	S.X.
0.24	28.7	0.97	1621285_at	CB347466	hypothetical protein LOC100251632	-	3e-24	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.
0.24	28.7	0.94	1616065_at	CA816079	hypothetical protein LOC100245646	-	1e-14	At3g59980	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.
0.24	28.7	0.97	1617425_at	BQ799379	hypothetical protein LOC100242172	-	2e-12	At5g21920	YGGT family protein	O.I.	H.G.	S.X.
0.24	28.7	0.96	1615706_at	CA816068	hypothetical protein LOC100257450	-	1e-4	At1g44920	unknown protein	O.I.	H.G.	S.X.
0.23	27.5	0.92	1613936_x_at	CF568996	-	-	8e-24	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.
0.23	27.5	0.96	1609993_at	CF415478	hypothetical protein LOC100267329	-	1e-3	At3g55040	GSTL2	O.I.	H.G.	S.X.
0.22	25.6	0.91	1617410_at	BQ800114	hypothetical protein LOC100263359	-	2e-3	At2g35810	unknown protein	O.I.	H.G.	S.X.
0.22	25.6	0.96	1616385_at	CB342680	hypothetical protein LOC100250293	-	4e+0	At4g23080	unknown protein	O.I.	H.G.	S.X.
0.22	25.6	0.95	1607111_at	BQ796309	hypothetical protein LOC100249657	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.
0.21	24.0	0.95	1609611_at	CF608067	hypothetical protein LOC100254000	-	9e-39	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.
0.20	22.4	0.97	1610525_at	CA814677	hypothetical protein LOC100260680	-	2e-15	At1g50900	-	O.I.	H.G.	S.X.
0.17	18.2	0.96	1621821_s_at	CD802160	hypothetical protein LOC100267911	-	3e-1	At4g29480	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.
0.17	18.2	0.95	1607273_at	CA817598	hypothetical protein LOC100261673	-	4e-3	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.0 88.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
1.8 86.0 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
1.7 84.7 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
1.7 84.7 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
1.6 83.3 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
1.5 81.7 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
1.5 81.7 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
1.5 81.7 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
1.5 81.7 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
1.5 81.7 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.0	88.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.5	81.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.5	81.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.5	81.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.5	81.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.5	81.7	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1622162_at
Gene name
Homology with Arabidopsis	Similar to At3g02390: unknown protein (HF=1e+0)
Module size	48 genes
NF	0.29
%ile	42.1

Co-expression analysis

Gene ID 1622162_at Gene name Homology with ArabidopsisSimilar to At3g02390: unknown protein (HF=1e+0) Module size 48 genes NF 0.29 %ile 42.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1622162_at

Gene name
Homology with Arabidopsis Similar to At3g02390: unknown protein (HF=1e+0)

Module size 48 genes

NF 0.29

%ile 42.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays