Co-expression analysis

Gene ID 1622127_at
Gene name hypothetical LOC100262546
Homology with ArabidopsisSimilar to At3g50070: CYCD3 (HF=9e-1)
Module size 7 genes
NF 0.65
%ile 91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.981622127_atCK138186.1hypothetical LOC100262546-9e-1At3g50070CYCD3O.I.H.G.S.X.
0.6787.90.981617357_atCB921493hypothetical protein LOC100263238-3e-25At5g57410unknown proteinO.I.H.G.S.X.
0.6787.90.981615779_atCF415379hypothetical protein LOC100263332-2e+1At5g16567unknown proteinO.I.H.G.S.X.
0.6787.90.981606978_s_atCF207835hypothetical protein LOC100242245-5e-1At1g16680DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeO.I.H.G.S.X.
0.6183.20.981607831_atBQ799075hypothetical protein LOC100249242-8e-7At3g03950protein bindingO.I.H.G.S.X.
0.6081.90.981616515_atCF211788hypothetical protein LOC100259212-5e+0At5g44900transmembrane receptorO.I.H.G.S.X.
0.4767.70.981612058_atCF513284hypothetical protein LOC100259015-3e-15At2g33845DNA-binding protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.4GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.692.5GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.390.7GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.289.9GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436357Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage