CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622099_at

Gene name
Homology with Arabidopsis Similar to At4g00165: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=4e+0)

Module size 6 genes

NF 0.64

%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.95 1622099_at CA811184 - - 4e+0 At4g00165 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.80 93.6 0.96 1610332_x_at CF204509.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.73 90.8 0.95 1620097_x_at CF202968.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.73 90.8 0.96 1607877_x_at CF202836.1 - - 3e+1 Atcg01250 - O.I. H.G. S.X.
0.53 75.2 0.96 1618679_s_at CB343106 - - 4e-83 Atcg00280 - O.I. H.G. S.X.
0.38 53.6 0.96 1621184_at CD009048 - - 3e+1 At3g02555 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.95	1611705_s_at	CF202744.1	-	-	1e+1	At5g40700	unknown protein	O.I.	H.G.	S.X.
0.60	81.9	0.95	1621501_at	CB342916	hypothetical protein LOC100243553	-	1e-3	At1g57820	VIM1 (VARIANT IN METHYLATION 1)	O.I.	H.G.	S.X.
0.50	72.7	0.91	1609244_at	CB344330	-	-	2e-1	At3g13445	TBP1 (TATA BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.50	72.7	0.93	1608600_at	CB972826	-	-	3e+0	At4g32780	phosphoinositide binding	O.I.	H.G.	S.X.
0.42	60.1	0.95	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	O.I.	H.G.	S.X.
0.40	57.7	0.93	1622286_at	CA818831	similar to photosystem II protein D2	-	0	Atcg00270	-	O.I.	H.G.	S.X.
0.40	57.7	0.94	1606704_s_at	CF200937.1	-	-	2e-103	Atcg00580	-	O.I.	H.G.	S.X.
0.40	57.7	0.94	1620265_at	BQ793093	-	-	0	Atcg00480	-	O.I.	H.G.	S.X.
0.39	54.9	0.94	1607398_at	CA816260	-	-	7e-97	Atcg00650	-	O.I.	H.G.	S.X.
0.32	43.1	0.96	1612357_s_at	CF203581.1	-	-	4e+0	At5g66240	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.30	39.4	0.94	1607106_s_at	CD720969	similar to Os06g0598500	-	0	Atcg00490	-	O.I.	H.G.	S.X.
0.29	37.7	0.97	1621593_s_at	AF347624.1	-	-	2e+0	At2g31083	CLE5 (CLAVATA3/ESR-RELATED 5)	O.I.	H.G.	S.X.
0.26	32.0	0.90	1617405_at	BQ798422	-	-	3e-1	At2g42390	protein kinase C substrate, heavy chain-related	O.I.	H.G.	S.X.
0.26	32.0	0.91	1622208_x_at	CF203749.1	-	-	7e-1	At2g26150	ATHSFA2	O.I.	H.G.	S.X.
0.25	30.5	0.95	1619641_at	CB339547	-	-	7e-98	Atcg00040	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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