CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1622099_at

Gene name
Homology with Arabidopsis Similar to At4g00165: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=4e+0)

Module size 6 genes

NF 0.64

%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.95 1622099_at CA811184 - - 4e+0 At4g00165 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.80 93.6 0.96 1610332_x_at CF204509.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.73 90.8 0.95 1620097_x_at CF202968.1 - - 8e-1 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.73 90.8 0.96 1607877_x_at CF202836.1 - - 3e+1 Atcg01250 - O.I. H.G. S.X.
0.53 75.2 0.96 1618679_s_at CB343106 - - 4e-83 Atcg00280 - O.I. H.G. S.X.
0.38 53.6 0.96 1621184_at CD009048 - - 3e+1 At3g02555 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.89425.1.A1_s_at, orthologous to the query gene, 1622099_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.5 GmaAffx.89425.1.A1_s_at At4g00165 - - 4e-1 At5g05110 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.81 91.7 GmaAffx.89665.1.A1_s_at At4g00165 - - 5e+0 At3g17350 unknown protein O.I. H.G. S.X.
0.77 90.3 soybean_rRNA_1721_at At4g00165 - - 1e+0 At3g56290 unknown protein O.I. H.G. S.X.
0.72 88.1 soybean_rRNA_1692_at At4g00165 - - 2e+1 Atmg00030 - O.I. H.G. S.X.
0.72 88.1 soybean_rRNA_1665_at At4g00165 - - 2e-2 At3g50390 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.72 88.1 Gma.17620.1.S1_s_at At4g00165 - - 2e+1 At5g67490 unknown protein O.I. H.G. S.X.
0.70 87.1 PsAffx.CL3Contig2_s_at At4g00165 - - 3e+0 At5g35520 MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE) O.I. H.G. S.X.
0.69 86.8 GmaAffx.89786.1.A1_s_at At4g00165 - - 7e+0 At5g09711 unknown protein O.I. H.G. S.X.
0.67 86.1 soybean_rRNA_718_at At4g00165 - - 2e+1 At1g07350 transformer serine/arginine-rich ribonucleoprotein, putative O.I. H.G. S.X.
0.65 83.8 soybean_rRNA_918_RC_at At4g00165 - - 5e+0 At5g48657 defense protein-related O.I. H.G. S.X.
0.65 83.8 soybean_rRNA_838_at At4g00165 - - 1e+0 At4g27700 rhodanese-like domain-containing protein O.I. H.G. S.X.
0.56 78.2 soybean_rRNA_1692_RC_at At4g00165 - - 2e+1 Atmg00030 - O.I. H.G. S.X.
0.55 76.3 GmaAffx.1301.14.S1_s_at At4g00165 - - 5e+0 At5g50440 MEMB12 (MEMBRIN 12) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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