Co-expression analysis

Gene ID	1622061_at
Gene name	hypothetical protein LOC100264484
Homology with Arabidopsis	Similar to At1g59820: ALA3 (Aminophospholipid ATPase3) (HF=3e-10)
Module size	6 genes
NF	0.58
%ile	85.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.99	1622061_at	CD798716	hypothetical protein LOC100264484	-	3e-10	At1g59820	ALA3 (Aminophospholipid ATPase3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1622769_at	BQ793816	hypothetical protein LOC100243302	-	1e-22	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.99	1611985_at	CF404643	hypothetical protein LOC100267021	-	2e-26	At5g15880	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1619680_at	CB975224	hypothetical protein LOC100254201	-	2e+0	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1619247_at	CB971481	hypothetical protein LOC100256712	-	7e-11	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.99	1616079_at	CD801867	hypothetical LOC100255014	-	3e-21	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.2	94.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.1	94.6	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
3.1	94.6	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.3	90.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.3	90.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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