Co-expression analysis

Gene ID	1622052_s_at
Gene name	hypothetical protein LOC100248585
Homology with Arabidopsis	Similar to At4g39220: ATRER1A (HF=2e-21)
Module size	6 genes
NF	0.72
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1622052_s_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1607847_at	CF517305	-	-	6e-50	At2g32170	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1612915_at	CF212348	hypothetical protein LOC100247677	-	8e-115	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1613718_s_at	CF202933.1	hypothetical protein LOC100241422	-	7e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1620509_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1608272_at	BQ796860	hypothetical protein LOC100255032	-	3e-36	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.8	93.4	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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