Co-expression analysis

Gene ID	1621951_at
Gene name	hypothetical protein LOC100252259
Homology with Arabidopsis	Similar to At5g38050: unknown protein (HF=3e-1)
Module size	29 genes
NF	0.31
%ile	45.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	0.80	1621951_at	BQ795175	hypothetical protein LOC100252259	-	3e-1	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.92	1620915_at	CF511488	-	-	2e-1	At2g17740	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.92	1606489_at	CF603755	hypothetical protein LOC100246245	-	4e-13	At4g25835	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.93	1613834_at	BQ797196	hypothetical protein LOC100258445	-	3e-9	At3g08030	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.88	1619310_at	CF405152	hypothetical protein LOC100249718	-	3e-1	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1615257_at	CB972713	hexose transporter-like	-	6e-12	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.93	1609303_at	CB982393	hypothetical protein LOC100266613	-	1e+0	At4g20470	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.91	1622333_at	CD799818	hypothetical protein LOC100264006	-	6e-25	At2g47260	WRKY23	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.93	1621448_at	BQ796150	hypothetical protein LOC100251801	-	7e-3	At5g07680	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.95	1619667_at	BQ797924	similar to DRT100	-	8e-1	At5g06860	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.88	1609172_at	BQ792053	hypothetical protein LOC100243607	-	3e-12	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1614444_at	CF517160	hypothetical protein LOC100248687	-	1e+0	At1g49650	cell death associated protein-related	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1606826_at	CF210409	hypothetical protein LOC100250592	-	1e-7	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1614297_at	BQ796093	hypothetical protein LOC100264651	-	2e-6	At4g32000	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.88	1617012_at	CD802399	hypothetical protein LOC100252609	-	1e-17	At5g25190	ethylene-responsive element-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1610428_at	CD012983	hypothetical protein LOC100263040	-	2e-4	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.92	1621034_at	CF406031	hypothetical protein LOC100244738 /// similar to phosphoenolpyruvate carboxykinase /// hypothetical protein LOC100257809	-	4e-110	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1612108_at	BQ800036	hypothetical protein LOC100248099	-	2e-1	At3g16330	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1607883_at	CB969241	hypothetical protein LOC100255480	-	5e+0	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1622477_at	CF414040	hypothetical protein LOC100261452	-	4e-4	At3g22550	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1617662_at	BQ794604	hypothetical protein LOC100263807	-	8e-13	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.92	1620347_at	CA814065	hypothetical protein LOC100245312	-	1e-13	At3g10320	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.88	1615970_at	CF405892	drought responsive element binding protein	-	1e+0	At5g17550	PEX19-2	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.89	1615147_at	CB981835	hypothetical protein LOC100248294	-	3e-1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.89	1616344_at	CF209136	hypothetical protein LOC100266776	-	2e-23	At1g63180	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.91	1619691_at	CF211807	hexose transporter-like	-	2e-17	At1g20840	TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.93	1611365_at	CF517841	hypothetical protein LOC100242388	-	3e-5	At5g67360	ARA12	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.91	1610862_at	CF215748	hypothetical protein LOC100260563	-	2e+0	At3g62650	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.88	1607073_at	CB913831	-	-	1e+1	At5g41761	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.0	88.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.7	84.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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