Co-expression analysis

Gene ID	1621905_at
Gene name
Homology with Arabidopsis	Similar to At3g11630: 2-cys peroxiredoxin, chloroplast (BAS1) (HF=4e-1)
Module size	6 genes
NF	0.32
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1621905_at	CF414354	-	-	4e-1	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1612656_at	CB971335	hypothetical protein LOC100264368 /// hypothetical protein LOC100263692 /// hypothetical LOC100244853 /// hypothetical LOC100245039 /// hypothetical LOC100258542 /// hypothetical LOC100261997 /// hypothetical LOC100267352	-	1e-66	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1615032_s_at	CF202631.1	hypothetical protein LOC100260505	-	4e-5	At2g20490	NOP10	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1608788_at	CF414358	hypothetical protein LOC100244969	-	2e-5	At5g65250	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1607687_s_at	BQ792489	hypothetical protein LOC100241478	-	3e-42	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1608128_at	CB342130	hypothetical protein LOC100263010	-	5e-47	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
1.9	87.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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