Co-expression analysis

Gene ID 1621904_at
Gene name
Homology with ArabidopsisSimilar to At5g08070: TCP17 (TCP DOMAIN PROTEIN 17) (HF=4e+0)
Module size 10 genes
NF 0.38
%ile 56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.891621904_atCF568995--4e+0At5g08070TCP17 (TCP DOMAIN PROTEIN 17)O.I.H.G.S.X.
0.6787.90.951610129_atCD718985--2e-2At5g10000ATFD4 (ferredoxin 4)O.I.H.G.S.X.
0.6787.90.961611600_atCD719533--8e-18At3g57000nucleolar essential protein-relatedO.I.H.G.S.X.
0.4464.10.961620697_atCF568836--1e+0At3g13857unknown proteinO.I.H.G.S.X.
0.4361.50.971607436_atCF568907--5e-24At3g60820PBF1O.I.H.G.S.X.
0.4361.50.971613219_atCF568857--4e-74At5g28850calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4057.70.961621365_atCK136934.1--9e-69At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.2124.00.961607704_atAF488697.1serine/threonine kinase-like-2e-18At1g12310calmodulin, putativeO.I.H.G.S.X.
0.1616.70.961608672_s_atCK138170.1--6e-33At2g2158040S ribosomal protein S25 (RPS25B)O.I.H.G.S.X.
0.1414.40.961611242_atCF369027hypothetical protein LOC100248144-4e+0At4g18500unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
1.987.2GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
1.987.2GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
1.886.0GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
1.784.7GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
1.784.7GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.784.7GSM436398V. riparia (VR, PI588259) LD, 15h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
1.784.7GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.784.7GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM436386Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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