Co-expression analysis

Gene ID	1621849_at
Gene name	hypothetical protein LOC100249556
Homology with Arabidopsis	Similar to At4g00810: 60S acidic ribosomal protein P1 (RPP1B) (HF=2e-5)
Module size	6 genes
NF	0.37
%ile	55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.96	1621849_at	CF203866.1	hypothetical protein LOC100249556	-	2e-5	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.96	1610463_at	CF204701.1	hypothetical protein LOC100246159	-	1e-53	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1619587_at	CF200656.1	-	-	1e-9	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1620727_at	CF202620.1	-	-	2e-11	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1621433_s_at	CD801322	hypothetical protein LOC100265528	-	2e-64	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1607676_at	CB983117	hypothetical protein LOC100262709	-	4e-6	At5g10020	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.5	95.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.7	93.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.2	89.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.1	89.1	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
1.8	86.0	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.7	84.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage