Co-expression analysis

Gene ID 1621840_at
Gene name
Homology with ArabidopsisSimilar to At1g64890: integral membrane transporter family protein (HF=4e-7)
Module size 6 genes
NF 0.02
%ile 4.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.841621840_atCB036000--4e-7At1g64890integral membrane transporter family proteinO.I.H.G.S.X.
0.099.40.941618295_atCD710711--1e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.045.20.941619575_atBQ793880--1e-3At1g48160signal recognition particle 19 kDa protein, putative / SRP19, putativeO.I.H.G.S.X.
0.023.20.941616402_a_atCF609414hypothetical protein LOC100241076-2e-15At4g36690ATU2AF65AO.I.H.G.S.X.
0.012.10.951617742_atCA817105hypothetical protein LOC100255734-4e-2At5g39910glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.012.10.921620579_atCB976610--5e-22At5g55500XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
3.094.2GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.692.5GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
2.591.9GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.289.9GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage