Co-expression analysis

Gene ID	1621836_at
Gene name	MADS-box protein 5
Homology with Arabidopsis	Similar to At4g09960: STK (SEEDSTICK) (HF=2e-9)
Module size	19 genes
NF	0.80
%ile	98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	85.0	0.94	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.97	1610616_at	CB921212	hypothetical protein LOC100260773 /// hypothetical protein LOC100252365	-	5e-3	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	O.I.	H.G.	S.X.	Please select
0.90	95.6	0.97	1611173_at	CB979091	hypothetical protein LOC100258969	-	1e+0	At3g25080	unknown protein	O.I.	H.G.	S.X.	Please select
0.90	95.6	0.97	1614697_at	CB346214	hypothetical protein LOC100255962	-	5e+0	At5g07550	GRP19 (GLYCINE-RICH PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.88	95.4	0.97	1614771_at	CB346222	hypothetical protein LOC100242179	-	1e+0	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.87	95.2	0.97	1615925_at	BQ793198	hypothetical protein LOC100260124	-	3e-4	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.85	94.9	0.96	1621346_at	CB978597	hypothetical protein LOC100263108	-	8e-2	At1g74440	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	94.9	0.97	1613191_at	CB348359	hypothetical protein LOC100254511	-	8e-2	At3g20850	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1620307_at	CB348708	hypothetical protein LOC100264814	-	2e-10	At2g33380	RD20 (RESPONSIVE TO DESSICATION 20)	O.I.	H.G.	S.X.	Please select
0.81	93.7	0.96	1617980_at	CB346475	-	-	8e-1	At5g66800	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1620137_s_at	CB911784	hypothetical protein LOC100260466	-	3e+0	At3g20510	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.96	1618312_at	CB976210	hypothetical protein LOC100240958	-	8e-2	At1g22540	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.97	1619031_at	CB976670	hypothetical protein LOC100266074	-	5e-10	At3g63140	CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.96	1613161_at	BQ792976	hypothetical protein LOC100257921	-	3e+0	At4g18860	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.96	1621723_at	CA817798	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.97	1622225_at	BQ793105	hypothetical protein LOC100249321	-	3e+0	At3g07425	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.98	1619180_at	CB976469	hypothetical protein LOC100252897	-	2e-14	At1g17810	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.97	1621786_at	CB914345	hypothetical protein LOC100249921	-	2e-3	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1619481_at	CB348820	hypothetical protein LOC100256947	-	2e-2	At4g25140	OLEO1 (OLEOSIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
1.6	83.3	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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