Co-expression analysis

Gene ID	1621822_at
Gene name	hypothetical protein LOC100263358
Homology with Arabidopsis	Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=6e-7)
Module size	7 genes
NF	0.26
%ile	37.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.93	1621822_at	CF516639	hypothetical protein LOC100263358	-	6e-7	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.93	1615935_at	CA809247	hypothetical protein LOC100259118	-	2e-7	At1g76980	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1609516_at	CB976436	similar to ribosomal protein L2	-	8e-9	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1618746_at	CF516441	-	-	4e+0	At5g57760	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1617225_at	BQ798495	hypothetical protein LOC100245147	-	3e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.95	1622320_at	CF514116	-	-	2e+1	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.94	1613759_s_at	CF517125	hypothetical protein LOC100259323	-	1e+0	At1g74870	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.3	90.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.0	88.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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