Co-expression analysis

Gene ID 1621807_at
Gene name
Homology with ArabidopsisSimilar to At2g29400: TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) (HF=1e-27)
Module size 11 genes
NF 0.22
%ile 31.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.941621807_atCF568822--1e-27At2g29400TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)O.I.H.G.S.X.
0.3650.70.941619724_atCA818237--1e-23At5g27640TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)O.I.H.G.S.X.
0.3446.80.951608570_atCD717861--1e-3At3g48590NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)O.I.H.G.S.X.
0.3141.30.961608351_atCK138128.1--4e-10At4g29340PRF4 (PROFILIN 4)O.I.H.G.S.X.
0.3039.40.951617607_atCB918932--3e-2At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.H.G.S.X.
0.2837.70.951613291_atCF972323.1--4e-4At3g13410unknown proteinO.I.H.G.S.X.
0.2837.70.951617112_atCF568911--7e-14At5g14250COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)O.I.H.G.S.X.
0.1920.90.951614526_atCD711134--4e-20At4g23850long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetaseO.I.H.G.S.X.
0.1414.40.951611551_atCD713530--2e-24At2g17410ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.088.50.951619876_atAF176496.1--7e-13At1g09640elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.077.80.941618720_atCD719639--6e-12At1g30000glycoside hydrolase family 47 proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.993.8GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM436393V. riparia (VR, PI588259) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
2.088.2GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
1.987.2GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
1.987.2GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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