Co-expression analysis

Gene ID 1621787_at
Gene name
Homology with ArabidopsisSimilar to At5g41600: BTI3 (VIRB2-INTERACTING PROTEIN 3) (HF=1e-1)
Module size 38 genes
NF 0.19
%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.99100.00.731621787_atAY427122.1--1e-1At5g41600BTI3 (VIRB2-INTERACTING PROTEIN 3)O.I.H.G.S.X.
0.4158.70.951620697_atCF568836--1e+0At3g13857unknown proteinO.I.H.G.S.X.
0.3650.70.951612775_atCK138199.1--8e-27At2g36530LOS2O.I.H.G.S.X.
0.3548.50.951621365_atCK136934.1--9e-69At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.3345.70.951617987_atCK138124.1--4e-81At3g62290ATARFA1E (ADP-ribosylation factor A1E)O.I.H.G.S.X.
0.3039.40.921620622_atCD718777--2e-11At2g16400BLH7 (bell1-like homeodomain 7)O.I.H.G.S.X.
0.3039.40.931620336_atCF568940--3e-65At5g3974060S ribosomal protein L5 (RPL5B)O.I.H.G.S.X.
0.3039.40.931620315_atCF604880--3e-6At2g36480zinc finger (C2H2-type) family proteinO.I.H.G.S.X.
0.3039.40.941611372_atCD711835--9e-61At1g43890ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)O.I.H.G.S.X.
0.2937.70.951607436_atCF568907--5e-24At3g60820PBF1O.I.H.G.S.X.
0.2937.70.961613219_atCF568857--4e-74At5g28850calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2837.70.941621883_atCK136961.1--2e+1At5g02780In2-1 protein, putativeO.I.H.G.S.X.
0.2734.00.961607704_atAF488697.1serine/threonine kinase-like-2e-18At1g12310calmodulin, putativeO.I.H.G.S.X.
0.2530.50.931611659_atCD712700--6e-40At1g21650ATP binding / protein bindingO.I.H.G.S.X.
0.2428.70.931612881_atBQ795786--4e-35At1g25490RCN1 (ROOTS CURL IN NPA)O.I.H.G.S.X.
0.2225.60.951616784_atCD007778--5e-45At3g19640magnesium transporter CorA-like family protein (MRS2-3)O.I.H.G.S.X.
0.2225.60.941611021_atCD721086--3e-1At5g58412-O.I.H.G.S.X.
0.2022.40.951607210_s_atCK138219.1hypothetical protein LOC100266938-6e+0At5g58900myb family transcription factorO.I.H.G.S.X.
0.2022.40.951613291_atCF972323.1--4e-4At3g13410unknown proteinO.I.H.G.S.X.
0.2022.40.941617721_atCF568847--1e-76At5g56030HSP81-2 (HEAT SHOCK PROTEIN 81-2)O.I.H.G.S.X.
0.1920.90.951611122_atCF568874--1e-36At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.1920.90.921619004_atBQ795665--2e+1At5g18040unknown proteinO.I.H.G.S.X.
0.1920.90.921622154_atCD720258--2e+0At5g54850unknown proteinO.I.H.G.S.X.
0.1819.40.951615701_atCK136879.1--5e+0At5g65410HB25 (HOMEOBOX PROTEIN 25)O.I.H.G.S.X.
0.1819.40.911607873_atCB004973--2e-26At2g30520RPT2 (ROOT PHOTOTROPISM 2)O.I.H.G.S.X.
0.1819.40.931614501_atCB920222--3e-2At4g00070-O.I.H.G.S.X.
0.1819.40.931616863_atCD718777hypothetical protein LOC100259827-2e-11At2g16400BLH7 (bell1-like homeodomain 7)O.I.H.G.S.X.
0.1414.40.971611833_atCB005444hypothetical protein LOC100256245-5e+0At2g01590CRR3 (CHLORORESPIRATORY REDUCTION 3)O.I.H.G.S.X.
0.1313.30.961610818_atBQ793110hypothetical protein LOC100250825-1e-14At2g35155catalyticO.I.H.G.S.X.
0.1212.10.951611242_atCF369027hypothetical protein LOC100248144-4e+0At4g18500unknown proteinO.I.H.G.S.X.
0.1010.30.921620552_atCF568948--5e-2At1g24050unknown proteinO.I.H.G.S.X.
0.099.40.981611974_atCF208396hypothetical protein LOC100258926-9e-27At2g15430NRPB3O.I.H.G.S.X.
0.088.50.981615411_s_atBQ799375hypothetical protein LOC100266324-3e-4At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.066.80.951616336_atCB973472hypothetical protein LOC100256840-1e+0At1g17510unknown proteinO.I.H.G.S.X.
0.056.00.951611551_atCD713530--2e-24At2g17410ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.056.00.981613208_atCF209522hypothetical protein LOC100267894-8e-38At1g16610SR45O.I.H.G.S.X.
0.045.20.931621000_atCF209896hypothetical protein LOC100245551-1e+0At1g06180ATMYB13 (MYB DOMAIN PROTEIN 13)O.I.H.G.S.X.
0.045.20.931608368_atCK136894.1--4e-1At3g27080TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.491.3GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.289.9GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.189.1GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM147683Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation12Link to GEO
1.987.2GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.784.7GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.683.3GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.581.7GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.581.7GSM436385Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage