Co-expression analysis

Gene ID	1621771_at
Gene name	40S ribosomal protein SA
Homology with Arabidopsis	Similar to At1g72370: P40 (HF=1e-110)
Module size	6 genes
NF	0.38
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1621771_at	CB348522	40S ribosomal protein SA	-	1e-110	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1621806_at	CF513282	hypothetical protein LOC100265511	-	1e-13	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1606468_at	CB346057	hypothetical protein LOC100256800	-	6e-25	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1608953_at	BQ797089	hypothetical protein LOC100249027	-	5e-19	At1g18080	ATARCA	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.99	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1616231_s_at	CB970587	hypothetical protein LOC100243340	-	1e-19	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
3.6	96.0	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
3.5	95.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.5	95.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.5	95.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.5	95.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.4	95.5	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
3.4	95.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
3.2	94.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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