Co-expression analysis

Gene ID	1621749_x_at
Gene name
Homology with Arabidopsis	Similar to At4g29960: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.76
%ile	97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1621749_x_at	CF569214.1	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.97	1611884_at	CF569214.1	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1615354_at	CF210983	-	-	2e-11	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1612659_at	CF204873.1	-	-	5e-62	At4g28390	AAC3 (ADP/ATP CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1611129_s_at	CB005644	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1616660_s_at	CF569214.1	similar to 60S ribosomal protein L19	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.7	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.0	98.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
3.3	95.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.3	95.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.2	94.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
3.1	94.6	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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