Co-expression analysis

Gene ID 1621730_at
Gene name
Homology with ArabidopsisSimilar to At3g16950: LPD1 (LIPOAMIDE DEHYDROGENASE 1) (HF=7e-19)
Module size 6 genes
NF 0.02
%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.881621730_atCF511530--7e-19At3g16950LPD1 (LIPOAMIDE DEHYDROGENASE 1)O.I.H.G.S.X.
0.2022.40.941618712_atCB003306--3e-1At4g21330DYT1 (DYSFUNCTIONAL TAPETUM 1)O.I.H.G.S.X.
0.1010.30.941607773_atCD719602--2e-30At5g07290AML4 (ARABIDOPSIS MEI2-LIKE 4)O.I.H.G.S.X.
0.012.10.931620387_atCD719602hypothetical protein LOC100260954-2e-30At5g07290AML4 (ARABIDOPSIS MEI2-LIKE 4)O.I.H.G.S.X.
0.012.10.961607928_atCF201793.1--5e-3At4g08230glycine-rich proteinO.I.H.G.S.X.
0.012.10.941611160_atCF415355--4e+0At1g48330unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.8GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM436384Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436420V. riparia (VR, PI588259) SD, 13h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147701Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation30Link to GEO
2.390.7GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147683Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation12Link to GEO
2.189.1GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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