CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621724_at

Gene name
Homology with Arabidopsis Similar to At5g25560: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)

Module size 6 genes

NF 0.09

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.76 1621724_at CB341760 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 72.7 0.98 1617032_s_at AF465408.1 lipid transfer protein /// lipid transfer protein - 9e-1 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.33 45.7 0.98 1609281_s_at AF467945.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.29 37.7 0.98 1620454_s_at AF467946.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.05 6.0 0.97 1612817_at CB002820 hypothetical protein LOC100267132 - 3e-1 At3g62330 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.03 4.2 0.94 1612273_at BQ799966 - - 3e-47 At2g34420 LHB1B2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.93	1621673_at	CD010829	-	-	5e-3	At5g05390	LAC12 (laccase 12)	O.I.	H.G.	S.X.
0.50	72.7	0.96	1617933_at	CF513341	-	-	4e+0	At3g22961	-	O.I.	H.G.	S.X.
0.44	64.1	0.89	1610878_at	CF200890.1	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	O.I.	H.G.	S.X.
0.40	57.7	0.96	1608523_at	CB339561	hypothetical protein LOC100253981	-	4e+0	At5g14340	AtMYB40 (myb domain protein 40)	O.I.	H.G.	S.X.
0.36	50.7	0.96	1608119_at	BQ800483	hypothetical LOC100244292 /// hypothetical LOC100248902	-	2e+1	At5g53030	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.87	1606569_at	AY427190.1	-	-	2e+0	At1g19210	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.33	45.7	0.96	1606923_s_at	CB344818	hypothetical protein LOC100255239	-	7e-6	At1g64850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.29	37.7	0.96	1616747_at	CF205411.1	-	-	1e-15	At4g09012	-	O.I.	H.G.	S.X.
0.27	34.0	0.96	1606986_at	CF201932.1	-	-	2e-31	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.
0.25	30.5	0.95	1616084_s_at	CF207508	-	-	5e-9	At1g19397	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1616447_at	BQ792485	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 95.5 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.1 94.6 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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