Co-expression analysis

Gene ID	1621724_at
Gene name
Homology with Arabidopsis	Similar to At5g25560: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)
Module size	6 genes
NF	0.09
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.76	1621724_at	CB341760	-	-	3e+0	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1617032_s_at	AF465408.1	lipid transfer protein /// lipid transfer protein	-	9e-1	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1612817_at	CB002820	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.94	1612273_at	BQ799966	-	-	3e-47	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.1	94.6	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.129204.1.S1_at, orthologous to the query gene, 1621724_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	PtpAffx.129204.1.S1_at	At5g25560	-	-	8e-2	At1g21670	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.20249.1.S1_s_at	At5g25560	hypothetical protein	-	3e-24	At4g31390	ABC1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.222509.1.S1_s_at	At5g25560	hypothetical protein	-	6e-60	At5g58140	PHOT2 (PHOTOTROPIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.222509.1.S1_at	At5g25560	hypothetical protein	-	6e-60	At5g58140	PHOT2 (PHOTOTROPIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.6377.2.S1_s_at	At5g25560	hypothetical protein	-	8e-99	At2g30950	VAR2 (VARIEGATED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.5042.3.S1_s_at	At5g25560	hypothetical protein	-	3e-20	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.206842.1.S1_at	At5g25560	hypothetical protein	-	2e-28	At4g31850	PGR3 (PROTON GRADIENT REGULATION 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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